mhap

locality-sensitive hashing to detect long-read overlaps

Install

All systems
curl cmd.cat/mhap.sh
Debian Debian
apt-get install mhap
Ubuntu
apt-get install mhap
image/svg+xml Kali Linux
apt-get install mhap
Windows (WSL2)
sudo apt-get update sudo apt-get install mhap
Raspbian
apt-get install mhap

mhap

locality-sensitive hashing to detect long-read overlaps

The MinHash Alignment Process (MHAP--pronounced MAP) is a reference implementation of a probabilistic sequence overlapping algorithm. Designed to efficiently detect all overlaps between noisy long-read sequence data. It efficiently estimates Jaccard similarity by compressing sequences to their representative fingerprints composed on min-mers (minimum k-mer).