Multimodal deep learning fusion of ultrafast-DCE MRI and clinical information for breast lesion classification.

Jean-Philippe Goldman http://www.unige.ch/lettres/linguistique/goldman/ https://orcid.org/0000-0003-4000-4199 University of Geneva, Linguistics Department

Belinda Lokaj Valentin Durand de Gevigney Amal-Dahila Djema Jamil Zaghir Jean-Philippe Goldman Mina Bjelogrlic Hugues Turbé Karen Kinkel Christian Lovis Jérôme Schmid Multimodal deep learning fusion of ultrafast-DCE MRI and clinical information for breast lesion classification. 109721 2025 188 Comput. Biol. Medicine https://doi.org/10.1016/j.compbiomed.2025.109721 db/journals/cbm/cbm188.html#LokajGDZGBTKLS25 streams/journals/cbm

Jamil Zaghir Jean-Philippe Goldman Nikola Bjelogrlic Mina Bjelogrlic Christian Lovis Bratly: A Python Extension for BRAT Functionalities. 943-949 2025 EMNLP (System Demonstrations) https://doi.org/10.18653/v1/2025.emnlp-demos.73 conf/emnlp/2025d db/conf/emnlp/emnlp2025d.html#ZaghirGBBL25

Johann Pignat Milena Vucetic Christophe Gaudet-Blavignac Jamil Zaghir Amandine Stettler Fanny Amrein Jonatan Bonjour Jean-Philippe Goldman Olivier Michielin Christian Lovis Mina Bjelogrlic FRACCO: A gold-standard annotated corpus of oncological entities with ICD-O-3.1 normalisation. 2025 October abs/2510.13873 CoRR https://doi.org/10.48550/arXiv.2510.13873 db/journals/corr/corr2510.html#abs-2510-13873 streams/journals/corr

Simona Doneva Sijing Qin Beate Sick Tilia Ellendorff Jean-Philippe Goldman Gerold Schneider Benjamin Ineichen Large language models to process, analyze, and synthesize biomedical texts: a scoping review. 107 2024 4 Discov. Artif. Intell. 1 https://doi.org/10.1007/s44163-024-00197-2 db/journals/dai/dai4.html#DonevaQSEGSI24 streams/journals/dai

Jamil Zaghir Mina Bjelogrlic Jean-Philippe Goldman Soukaïna Aananou Christophe Gaudet-Blavignac Christian Lovis FRASIMED: A Clinical French Annotated Resource Produced through Crosslingual BERT-Based Annotation Projection. 7450-7460 2024 LREC/COLING https://aclanthology.org/2024.lrec-main.657 conf/coling/2024 db/conf/coling/coling2024.html#ZaghirBGAGL24 Simona Doneva Tilia Ellendorff Beate Sick Jean-Philippe Goldman Amelia Cannon Gerold Schneider Benjamin Ineichen NeuroTrialNER: An Annotated Corpus for Neurological Diseases and Therapies in Clinical Trial Registries. 18868-18890 2024 EMNLP https://doi.org/10.18653/v1/2024.emnlp-main.1050 https://aclanthology.org/2024.emnlp-main.1050 conf/emnlp/2024 db/conf/emnlp/emnlp2024.html#DonevaESGCSI24 Jean-Philippe Goldman Pablo Jané Jamil Zaghir Eliluane Pirazzo Andrade Teixeira Débora Elisa Peretti Valentina Garibotto Christian Lovis Automatic Classification of Conclusions from Multi-Tracer Reports of PET Brain Imaging in Cognitive Impairment. 560-564 2024 MIE https://doi.org/10.3233/SHTI240476 conf/mie/2024 db/conf/mie/mie2024.html#GoldmanJZTPGL24 Jamil Zaghir Mina Bjelogrlic Jean-Philippe Goldman Adel Bensahla Yuanyuan Zheng Christian Lovis Beyond Tokens: Fair Evaluation of French Large Language Models for Clinical Named Entity Recognition. 666-670 2024 MIE https://doi.org/10.3233/SHTI240502 conf/mie/2024 db/conf/mie/mie2024.html#ZaghirBGBZL24 Jamil Zaghir Belinda Lokaj Karen Kinkel Amal-Dahila Djema Hugues Turbé Mina Bjelogrlic Valentin Durand de Gevigney Jérôme Schmid Christian Lovis Jean-Philippe Goldman Efficient Clinical Information Extraction from Breast Radiology Reports in French. 1780-1784 2024 MIE https://doi.org/10.3233/SHTI240776 conf/mie/2024 db/conf/mie/mie2024.html#ZaghirLKDTBGSLG24

Jamil Zaghir Mina Bjelogrlic Jean-Philippe Goldman Soukaïna Aananou Christophe Gaudet-Blavignac Christian Lovis FRASIMED: a Clinical French Annotated Resource Produced through Crosslingual BERT-Based Annotation Projection. 2023 abs/2309.10770 CoRR https://doi.org/10.48550/arXiv.2309.10770 db/journals/corr/corr2309.html#abs-2309-10770

Luc Mottin Jean-Philippe Goldman Christoph Jäggli Rita Achermann Julien Gobeill Julien Knafou Julien Ehrsam Alexandre Wicky Camille L. Gerard Tanja Schwenk Mélinda Charrier Petros Tsantoulis Christian Lovis Alexander B. Leichtle Michael Kiessling Olivier Michielin Sylvain Pradervand Vasiliki Foufi Patrick Ruch Classification of oncology treatment responses from radiology reports with supervised machine learning. 2022 AMIA https://knowledge.amia.org/76677-amia-1.4637602/f008-1.4640715/f008-1.4640716/881-1.4641119/677-1.4641116 conf/amia/2022 db/conf/amia/amia2022.html#MottinGJAGKEWGS22 Jamil Zaghir Jean-Philippe Goldman Mina Bjelogrlic Christophe Gaudet-Blavignac Christian Lovis Caregivers Interactions with Clinical Autocomplete Tool: A Retrospective Study. 132-135 2022 ICIMTH https://doi.org/10.3233/SHTI220679 conf/icimth/2022 db/conf/icimth/icimth2022.html#ZaghirGBGL22 Vera Bernhard Sandra Schwab Jean-Philippe Goldman Acoustic Stress Detection in Isolated English Words for Computer-Assisted Pronunciation Training. 3143-3147 2022 INTERSPEECH https://doi.org/10.21437/Interspeech.2022-197 conf/interspeech/2022 db/conf/interspeech/interspeech2022.html#BernhardSG22 Hugues Turbé Mina Bjelogrlic Mehdi Namdar Christophe Gaudet-Blavignac Jamil Zaghir Jean-Philippe Goldman Belinda Lokaj Christian Lovis A Lightweight and Interpretable Model to Classify Bundle Branch Blocks from ECG Signals. 43-47 2022 MIE https://doi.org/10.3233/SHTI220393 conf/mie/2022 db/conf/mie/mie2022.html#TurbeBNGZGLL22 Jean-Philippe Goldman Luc Mottin Jamil Zaghir Daniel Keszthelyi Belinda Lokaj Hugues Turbé Julien Gobeill Patrick Ruch Julien Ehrsam Christian Lovis Classification of Oncology Treatment Responses from French Radiology Reports with Supervised Machine Learning. 849-853 2022 MIE https://doi.org/10.3233/SHTI220605 conf/mie/2022 db/conf/mie/mie2022.html#GoldmanMZKLTGRE22 Jamil Zaghir Jean-Philippe Goldman Mina Bjelogrlic Daniel Keszthelyi Christophe Gaudet-Blavignac Hugues Turbé Belinda Lokaj Christian Lovis Performance of Machine Learning Methods to Classify French Medical Publications. 874-875 2022 MIE https://doi.org/10.3233/SHTI220613 conf/mie/2022 db/conf/mie/mie2022.html#ZaghirGBKGTLL22 Vasiliki Foufi Kuntheavy Ing Lorenzini Jean-Philippe Goldman Christophe Gaudet-Blavignac Christian Lovis Caroline Samer Automatic Classification of Discharge Letters to Detect Adverse Drug Reactions. 48-52 2020 MIE https://doi.org/10.3233/SHTI200120 https://www.wikidata.org/entity/Q96635492 conf/mie/2020 db/conf/mie/mie2020.html#FoufiLGGLS20 Arnaud Robert Francis Damachi Mina Bjelogrlic Jean-Philippe Goldman Christian Lovis Evaluation of Document Retrieval Systems on a Medical Corpus in French: Indexation vs. Feature Learning. 208-212 2020 MIE https://doi.org/10.3233/SHTI200152 https://www.wikidata.org/entity/Q96635558 conf/mie/2020 db/conf/mie/mie2020.html#RobertDBGL20 Jean-Philippe Goldman Simon Clematide Mathieu Avanzi Raphaël Tandler Strategies and Challenges for Crowdsourcing Regional Dialect Perception Data for Swiss German and Swiss French. 2018 LREC conf/lrec/2018 db/conf/lrec/lrec2018.html#GoldmanCAT18 http://www.lrec-conf.org/proceedings/lrec2018/summaries/920.html Jean-Philippe Goldman Sandra Schwab MIAPARLE: Online training for the discrimination of stress contrasts. 2018 LREC conf/lrec/2018 db/conf/lrec/lrec2018.html#GoldmanS18 http://www.lrec-conf.org/proceedings/lrec2018/summaries/558.html Jean-Philippe Goldman Yves Scherrer Julie Glikman Mathieu Avanzi Christophe Benzitoun Philippe Boula de Mareüil Crowdsourcing Regional Variation Data and Automatic Geolocalisation of Speakers of European French. 2018 LREC conf/lrec/2018 db/conf/lrec/lrec2018.html#GoldmanSGABM18 http://www.lrec-conf.org/proceedings/lrec2018/summaries/517.html

George Christodoulides Mathieu Avanzi Jean-Philippe Goldman DisMo: A Morphosyntactic, Disfluency and Multi-Word Unit Annotator. An Evaluation on a Corpus of French Spontaneous and Read Speech. 2018 abs/1802.02926 CoRR http://arxiv.org/abs/1802.02926 db/journals/corr/corr1802.html#abs-1802-02926

Jean-Philippe Goldman Pierre-Edouard Honnet Robert A. J. Clark Philip N. Garner Maria Ivanova Alexandros Lazaridis Hui Liang Tiago Macedo Beat Pfister Manuel Sam Ribeiro Eric Wehrli Junichi Yamagishi The SIWIS Database: A Multilingual Speech Database with Acted Emphasis. 1532-1535 2016 INTERSPEECH https://doi.org/10.21437/Interspeech.2016-1003 conf/interspeech/2016 db/conf/interspeech/interspeech2016.html#GoldmanHCGILLMP16 Simon Clematide Karina Frick Noëmi Aepli Jean-Philippe Goldman Crowdsourcing Swiss Dialect Transcriptions for Assessing Factors in Writing Variations. 2016 KONVENS https://www.linguistics.rub.de/konvens16/pub/8_konvensproc.pdf conf/konvens/2016 db/conf/konvens/konvens2016.html#ClematideFAG16 Philippe Boula de Mareüil Jean-Philippe Goldman Albert Rilliard Yves Scherrer Frédéric Vernier Cartopho : un site web de cartographie de variantes de prononciation en français (Cartopho: a website for mapping pronunciation variants in French). 119-127 2016 JEP-TALN-RECITAL (1) https://aclanthology.org/2016.jeptalnrecital-jep.14/ conf/taln/2016-1 db/conf/taln/jep2016.html#MareuilGRSV16 Yves Scherrer Philippe Boula de Mareüil Jean-Philippe Goldman Crowdsourced mapping of pronunciation variants in European French. 2015 ICPhS https://www.internationalphoneticassociation.org/icphs-proceedings/ICPhS2015/Papers/ICPHS0421.pdf conf/icphs/2015 db/conf/icphs/icphs2015.html#ScherrerMG15 Adrian Leemann Marie-José Kolly Jean-Philippe Goldman Volker Dellwo Ingrid Hove Ibrahim Almajai Sarah Grimm Sylvain Robert Daniel Wanitsch Voice Äpp: a mobile app for crowdsourcing Swiss German dialect data. 2804-2808 2015 INTERSPEECH https://doi.org/10.21437/Interspeech.2015-590 conf/interspeech/2015 db/conf/interspeech/interspeech2015.html#LeemannKGDHAGRW15 Marie-José Kolly Adrian Leemann Volker Dellwo Jean-Philippe Goldman Ingrid Hove Ibrahim Almajai Swiss Voice App: A smartphone application for crowdsourcing Swiss German dialect data. 2014 DH http://dharchive.org/paper/DH2014/Paper-819.xml conf/dihu/2014 db/conf/dihu/dh2014.html#KollyLDGHA14 Anne Lacheret Sylvain Kahane Julie Beliao Anne Dister Kim Gerdes Jean-Philippe Goldman Nicolas Obin Paola Pietrandrea Atanas Tchobanov Rhapsodie: a Prosodic-Syntactic Treebank for Spoken French. 295-301 2014 LREC http://www.lrec-conf.org/proceedings/lrec2014/summaries/381.html conf/lrec/2014 db/conf/lrec/lrec2014.html#LacheretKBDGGOPT14 Jean-Philippe Goldman Tea Prsir Antoine Auchlin C-PhonoGenre: a 7-hours corpus of 7 speaking styles in French: relations between situational features and prosodic properties. 302-305 2014 LREC http://www.lrec-conf.org/proceedings/lrec2014/summaries/870.html conf/lrec/2014 db/conf/lrec/lrec2014.html#GoldmanPA14 Jean-Philippe Goldman Adrian Leemann Marie-José Kolly Ingrid Hove Ibrahim Almajai Volker Dellwo Steven Moran A Crowdsourcing Smartphone Application for Swiss German: Putting Language Documentation in the Hands of the Users. 3444-3447 2014 LREC http://www.lrec-conf.org/proceedings/lrec2014/summaries/214.html conf/lrec/2014 db/conf/lrec/lrec2014.html#GoldmanLKHADM14 George Christodoulides Mathieu Avanzi Jean-Philippe Goldman DisMo: A Morphosyntactic, Disfluency and Multi-Word Unit Annotator. An Evaluation on a Corpus of French Spontaneous and Read Speech. 3902-3907 2014 LREC http://www.lrec-conf.org/proceedings/lrec2014/summaries/929.html conf/lrec/2014 db/conf/lrec/lrec2014.html#ChristodoulidesAG14 Alexandros Lazaridis Elie Khoury 0001 Jean-Philippe Goldman Mathieu Avanzi Sébastien Marcel Philip N. Garner Swiss French Regional Accent Identification. 2014 Odyssey https://doi.org/10.21437/Odyssey.2014-17 conf/odyssey/2014 db/conf/odyssey/odyssey2014.html#LazaridisKGAMG14 106-111 Jean-Philippe Goldman Mathieu Avanzi Anne-Catherine Simon Antoine Auchlin A Continuous Prominence Score Based On Acoustic Features. 2012 INTERSPEECH https://doi.org/10.21437/Interspeech.2012-632 conf/interspeech/2012 db/conf/interspeech/interspeech2012.html#GoldmanASA12 2414-2417 Jean-Philippe Goldman EasyAlign: An Automatic Phonetic Alignment Tool Under Praat. 3233-3236 2011 INTERSPEECH conf/interspeech/2011 db/conf/interspeech/interspeech2011.html#Goldman11 https://doi.org/10.21437/Interspeech.2011-815 Lorenza Russo Yves Scherrer Jean-Philippe Goldman Sharid Loáiciga Luka Nerima Eric Wehrli Étude inter-langues de la distribution et des ambiguïtés syntaxiques des pronoms (A study of cross-language distribution and syntactic ambiguities of pronouns). 254-259 2011 TALN (Articles courts) https://aclanthology.org/2011.jeptalnrecital-court.43/ conf/taln/2011-2 db/conf/taln/taln2011-2.html#RussoSGLNW11 Yves Scherrer Lorenza Russo Jean-Philippe Goldman Sharid Loáiciga Luka Nerima Eric Wehrli La traduction automatique des pronoms. Problèmes et perspectives (Automatic translation of pronouns. Problems and perspectives). 260-265 2011 TALN (Articles courts) https://aclanthology.org/2011.jeptalnrecital-court.44/ conf/taln/2011-2 db/conf/taln/taln2011-2.html#ScherrerRGLNW11 Jean-Philippe Goldman Mathieu Avanzi Antoine Auchlin Hesitations in read vs. spontaneous French in a multi-genre corpus. 101-104 2010 DiSS-LPSS https://www.isca-archive.org/diss_2010/goldman10_diss.html conf/diss/2010 db/conf/diss/diss2010.html#GoldmanAA10 Jean-Philippe Goldman Sophie Roekhaut Anne-Catherine Simon Adding speaking style to a TTS system. 351-354 2010 SSW https://www.isca-archive.org/ssw_2010/goldman10_ssw.html conf/ssw/2010 db/conf/ssw/ssw2010.html#GoldmanRS10 Olivier Blanc Noémi Boubel Jean-Philippe Goldman Sophie Roekhaut Anne-Catherine Simon Cédrick Fairon Richard Beaufort Expressive : Génération automatique de parole expressive à partir de données non linguistiques. 20-23 2010 TALN (Demonstrations) https://aclanthology.org/2010.jeptalnrecital-demonstration.5/ conf/taln/2010-3 db/conf/taln/taln2010-3.html#BlancBGRSFB10 Jean-Philippe Goldman Kamel Nebhi Christopher Laenzlinger FipsColor : grammaire en couleur interactive pour l'apprentissage du français. 32-35 2010 TALN (Demonstrations) https://aclanthology.org/2010.jeptalnrecital-demonstration.8/ conf/taln/2010-3 db/conf/taln/taln2010-3.html#GoldmanNL10 Martijn Goudbeek Jean-Philippe Goldman Klaus R. Scherer Emotion dimensions and formant position. 1575-1578 2009 INTERSPEECH https://doi.org/10.21437/Interspeech.2009-469 conf/interspeech/2009 db/conf/interspeech/interspeech2009.html#GoudbeekGS09 Martijn Goudbeek Jean-Philippe Goldman Klaus R. Scherer Emotions and articulatory precision. 317 2008 INTERSPEECH https://www.isca-speech.org/archive/interspeech_2008/goudbeek08_interspeech.html conf/interspeech/2008 db/conf/interspeech/interspeech2008.html#GoudbeekGS08 Jean-Philippe Goldman Mathieu Avanzi Anne-Catherine Simon Anne Lacheret Antoine Auchlin A methodology for the automatic detection of perceived prominent syllables in spoken French. 98-101 2007 INTERSPEECH https://doi.org/10.21437/Interspeech.2007-38 conf/interspeech/2007 db/conf/interspeech/interspeech2007.html#GoldmanASLA07 Cécile Fougeron Jean-Philippe Goldman Ulrich H. Frauenfelder Liaison and schwa deletion in French: an effect of lexical frequency and competition? 639-642 2001 INTERSPEECH https://doi.org/10.21437/Eurospeech.2001-168 conf/interspeech/2001 db/conf/interspeech/interspeech2001.html#FougeronGF01 Jean-Philippe Goldman Arnaud Gaudinat Luka Nerima Eric Wehrli FipsVox: A French TTS based on a syntactic parser. 205 2001 SSW https://www.isca-archive.org/ssw_2001/goldman01_ssw.html conf/ssw/2001 db/conf/ssw/ssw2001.html#GoldmanGNW01 Cécile Fougeron Jean-Philippe Goldman Alicia Dart Laurence Guélat Clémentine Jeager Influence de facteurs stylistiques, syntaxiques et lexicaux sur la réalisation de la liaison en français. 172-181 2001 TALN (Articles longs) https://aclanthology.org/2001.jeptalnrecital-long.15/ conf/taln/2001-1 db/conf/taln/taln2001-1.html#FougeronGDGJ01 Arnaud Gaudinat Jean-Philippe Goldman Eric Wehrli Syntax-based speech recognition: how a syntactic parser can help a recognition system. 1999 EUROSPEECH https://doi.org/10.21437/Eurospeech.1999-402x conf/interspeech/1999 db/conf/interspeech/eurospeech1999.html#GaudinatGW99 Philippe Boula de Mareüil François Yvon Christophe d'Alessandro V. Auberg Michel Bagein Gérard Bailly Frédéric Béchet S. Fonkia Jean-Philippe Goldman Eric Keller Douglas D. O'Shaughnessy Steve Pagel F. Sannier Jean Véronis Brigitte Zellner Keller Evaluation of grapheme-to phoneme conversion for text-to-speech synthesis in French. 641-646 1998 LREC conf/lrec/1998 db/conf/lrec/lrec1998.html#MareuilYdABBBFG98 Mohammad Mehdi Homayounpour Jean-Philippe Goldman Gérard Chollet Jacqueline Vaissière Performance comparison of machine and human speaker verification. 1993 EUROSPEECH https://doi.org/10.21437/Eurospeech.1993-517 conf/interspeech/1993 db/conf/interspeech/eurospeech1993.html#HomayounpourGCV93 2295-2298 Soukaïna Aananou Rita Achermann Noëmi Aepli Ibrahim Almajai Fanny Amrein V. Auberg Antoine Auchlin Mathieu Avanzi Michel Bagein Gérard Bailly Richard Beaufort Frédéric Béchet Julie Beliao Adel Bensahla Christophe Benzitoun Vera Bernhard Mina Bjelogrlic Nikola Bjelogrlic Olivier Blanc Jonatan Bonjour Noémi Boubel Amelia Cannon Mélinda Charrier Gérard Chollet George Christodoulides Robert A. J. Clark Simon Clematide Christophe d'Alessandro Francis Damachi Alicia Dart Volker Dellwo Anne Dister Amal-Dahila Djema Simona Doneva Julien Ehrsam Tilia Ellendorff Cédrick Fairon S. Fonkia Vasiliki Foufi Cécile Fougeron Ulrich H. Frauenfelder Karina Frick Valentina Garibotto Philip N. Garner Christophe Gaudet-Blavignac Arnaud Gaudinat Camille L. Gerard Kim Gerdes Valentin Durand de Gevigney Julie Glikman Julien Gobeill Martijn Goudbeek Sarah Grimm Laurence Guélat Mohammad Mehdi Homayounpour Pierre-Edouard Honnet Ingrid Hove Benjamin Ineichen Maria Ivanova Christoph Jäggli Pablo Jané Clémentine Jeager Sylvain Kahane Brigitte Zellner Keller Eric Keller Daniel Keszthelyi Elie Khoury 0001 Michael Kiessling Karen Kinkel Julien Knafou Marie-José Kolly Anne Lacheret Christopher Laenzlinger Alexandros Lazaridis Adrian Leemann Alexander B. Leichtle Hui Liang Sharid Loáiciga Belinda Lokaj Kuntheavy Ing Lorenzini Christian Lovis Tiago Macedo Sébastien Marcel Philippe Boula de Mareüil Olivier Michielin Steven Moran Luc Mottin Mehdi Namdar Kamel Nebhi Luka Nerima Nicolas Obin Douglas D. O'Shaughnessy Steve Pagel Débora Elisa Peretti Beat Pfister Paola Pietrandrea Johann Pignat Sylvain Pradervand Tea Prsir Sijing Qin Manuel Sam Ribeiro Albert Rilliard Arnaud Robert Sylvain Robert Sophie Roekhaut Patrick Ruch Lorenza Russo Caroline Samer F. Sannier Klaus R. Scherer Yves Scherrer Jérôme Schmid Gerold Schneider Sandra Schwab Tanja Schwenk Beate Sick Anne-Catherine Simon Amandine Stettler Raphaël Tandler Atanas Tchobanov Eliluane Pirazzo Andrade Teixeira Petros Tsantoulis Hugues Turbé Jacqueline Vaissière Frédéric Vernier Jean Véronis Milena Vucetic Daniel Wanitsch Eric Wehrli Alexandre Wicky Junichi Yamagishi François Yvon Jamil Zaghir Yuanyuan Zheng