Biomedical Engineer Computational Neuroscience Researcher Software Engineer

Emily Messenger

I work at the intersection of computer science and neuroscience, where I believe fields like computational neuroscience and neurotechnology will yield cutting-edge technologies and ultimately—invaluable healthcare solutions.

Emily Messenger
Children's Mercy University of Kansas Medical Center Boston Children's Hospital Harvard Medical School Children's Mercy University of Kansas Medical Center Boston Children's Hospital Harvard Medical School

About

From a young age, I've been infatuated with the brain. In high school, I spent several summers interning at the University of Kansas Medical Center. I investigated the implications of the amyloid-β protein for Alzheimer's disease and the relationship between the gastrointestinal system and spinal cord injury.

At Northeastern University, I began to notice remarkable parallels between computation and biological cognition. Since then, I've been investigating how those disciplines might inform or advance each other. As a Research Fellow at the Children's Mercy Research Institute, I'm studying neonatal brain development by reconstructing the functional connectome: a map of the correlations in neural activity among brain regions, denoting which regions work synchronously with one another. I'm grateful for the opportunity to continue my work at Boston Children's Hospital and Harvard Medical School this fall, where I'll use deep learning techniques to study fetal development.

Outside of the lab, I spend my time listening to Clairo and caring for my ever-growing collection of houseplants!

Projects

Image

NeoFlow

An optimal pre- and post-processing workflow for reconstructing brain networks to create individual connectomes from neonatal rs-fMRI data​.

Python NumPy NiBabel NiPype
Data Visualization Project

Discord Music Bot

Users can play, stop, resume, skip, or queue additional songs as they listen from their Discord channel. Created during Women in Computing's annual Mini Hackathon.

Python Discord API YouTube API

Resume

Education

University of Kansas | University Honors Program | SELF Fellowship

B.S., Major in Applied Computing: 4.0 GPA, Minor in Biomedical Engineering: 4.0 GPA

  May 2025 - May 2028
  Lawrence, KS

Northeastern University | John Martinson Honors Program

Transferred, Major in Computer Science and Behavioral Neuroscience: 4.0 GPA

  Sep. 2024 - Apr. 2025
  Boston, MA

Experience

Incoming Research Fellow

Boston Children's Hospital & Harvard Medical School | NeuroIm Lab

  Fall 2026
  Boston, MA

Incoming Summer Scholar

University of Kansas Medical Center | Precision Neural Dynamics Lab

  Summer 2026
  Kansas City, KS

AI/ML Fellow

Break Through Tech | 2026-2027 Cohort

  Mar. 2026 - Present
  Remote

SELF Fellow

University of Kansas School of Engineering | Class of 2028 Cohort

  Mar. 2026 - Present
  Lawrence, KS

Co-Founder

  Mar. 2026 - Present
  Lawrence, KS

Summer Scholar/Research Fellow

Children's Mercy Research Institute | Advanced Neuroimaging Lab

  June 2025 - Present
  Kansas City, MO

Technical Skills

Languages: Python, Java, MATLAB, Bash, Racket, VHDL, HTML/CSS

Frameworks: FSL, AFNI

Developer Tools: GitHub, VS Code, Eclipse, SLURM

Libraries: NiPype, NiBabel, Matplotlib, NumPy, PyTorch, Brain Connectivity Toolbox, Statistics and Machine Learning Toolbox

Download

Contact

emilymessenger@ku.edu
linkedin.com/in/emily-messenger/
github.com/emilymessenger