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loicduchesne/README.md

Hi there, I'm Loïc Duchesne 👋

I am an Electrical Engineering student focusing on Machine Learning in biological domains

About me

  • Doing a Bachelor's of Engineering in Electrical Engineering with a Minor in Artificial Intelligence at McGill University
  • Focused on Natural Language Processing and ML in Computational Biology (Genomics and Network Biology)
  • Also working in Embedded Systems based on Assembly and C
  • Interested in leveraging Machine Learning to solve complex problems

Tech Stack

Python | C++ | C | Java | PyTorch | HuggingFace | SmolAgent | CUDA | MPS | Git | Pandas | CuPy | Numpy | SSH | Cloud Computing | AWS S3 | Latex | Scikit Learn | Plotly | Matplotlib | Assembly (Armv7) | VHDL | Julia

Projects

  • NeuroAgent: Multi-modal agentic framework for complex brain analysis and reasoning
  • KERT: An implementation of Kolmogorov-Arnold Network into BERT
  • Gene Regulatory Network inference on GENIE3/GRNBoost2
  • Single-cell data modeling with NMF and ETM
  • Training genomic dataset on a Genome Language Model (HyenaDNA)
  • CUDA accelerated implementation of Multilayer Perceptrons algorithm from scratch
  • Semantic Segmentation fine-tuning on PyTorch Deeplabv3 ResNet
  • Ray-Tracing implementation in C++ (OpenGL)

Pinned Loading

  1. scKAGAE scKAGAE Public

    Kolmogorov-Arnold Graph Auto-Encoder for semi-supervised Gene Regulatory Networks inference using Expression matrix and known-TFs.

    Jupyter Notebook

  2. CUDAMultilayerPerceptron CUDAMultilayerPerceptron Public

    GPU-accelerated Multilayer Perceptron using CuPy.

    Python 1

  3. SemanticSegmentation SemanticSegmentation Public

    Semantic Segmentation fine-tuning using DeepLabv3 ResNet50 on Cityscapes dataset.

    Jupyter Notebook

  4. TradingBot TradingBot Public

    Forked from xaileena/Crypto-Bot

    McHacks 2023 Project - Stocks Chatbot

    Python

  5. TesterToJUnit5 TesterToJUnit5 Public

    Python

  6. ecse222-vhdl-projects ecse222-vhdl-projects Public

    VHDL