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@satijalab

satijalab

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  1. seurat seurat Public

    R toolkit for single cell genomics

    R 2.6k 982

  2. azimuth azimuth Public

    A Shiny web app for mapping datasets using Seurat v4

    HTML 144 43

  3. seurat-wrappers seurat-wrappers Public

    Community-provided extensions to Seurat

    R 356 143

  4. seurat-data seurat-data Public

    Dataset distribution for Seurat

    R 151 45

Repositories

Showing 10 of 26 repositories
  • AzimuthAPI Public
    satijalab/AzimuthAPI’s past year of commit activity
    R 4 MIT 1 5 1 Updated Feb 11, 2026
  • seurat Public

    R toolkit for single cell genomics

    satijalab/seurat’s past year of commit activity
    R 2,648 982 251 37 Updated Feb 6, 2026
  • seurat-object Public
    satijalab/seurat-object’s past year of commit activity
    R 33 34 44 9 Updated Feb 6, 2026
  • seurat-wrappers Public

    Community-provided extensions to Seurat

    satijalab/seurat-wrappers’s past year of commit activity
    R 356 GPL-3.0 143 91 19 Updated Jan 30, 2026
  • scSLIDE Public
    satijalab/scSLIDE’s past year of commit activity
    R 4 0 1 0 Updated Jan 29, 2026
  • seurat-docker Public

    Docker images of Seurat

    satijalab/seurat-docker’s past year of commit activity
    Dockerfile 9 9 0 0 Updated Jan 22, 2026
  • sctransform Public

    R package for modeling single cell UMI expression data using regularized negative binomial regression

    satijalab/sctransform’s past year of commit activity
    R 250 GPL-3.0 36 49 0 Updated Jan 10, 2026
  • Mixscale Public
    satijalab/Mixscale’s past year of commit activity
    R 24 2 16 0 Updated Oct 10, 2025
  • panhumanpy Public
    satijalab/panhumanpy’s past year of commit activity
    Python 24 1 4 4 Updated Oct 1, 2025
  • rna-fingerprinting Public
    satijalab/rna-fingerprinting’s past year of commit activity
    R 7 0 0 0 Updated Sep 21, 2025
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