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SOFTWARE

  • Software Tools
  • Legacy Tools
BigMHC

BigMHC

[github]  [pub]
Predict immunogenic neoepitopes with deep learning

Software Tools
openCRAVAT

openCRAVAT

[url]  [github]  [pub]
A modular annotation tool for genomic variants

Software Tools
PICTograph

PICTograph

[github]  [pub]
Bayesian method to model tumor evolution

Software Tools
CHASMplus

CHASMplus

[github]  [pub]
Cancer-specific driver mutation prediction

Software Tools
MHCnuggets

MHCnuggets

[github]  [pub]
Neoantigen prediction with deep learning

Software Tools
HotMAPS

HotMAPS

[github]  [pub]
3D hotspot mutation identification

Software Tools
20/20+

20/20+

[github]  [pub]
Cancer driver gene prediction

Software Tools
SCHISM

SCHISM

[github]  [pub]
Infer clonal evolutionary history of tumors

Legacy Tools
VEST

VEST

[url]  [pub]
Predict pathogenic variants

Software Tools
CLUMP

CLUMP

[github]  [pub]
Case-control clustering of variants in 1D

Software Tools
MOCA

MOCA

MOCA  [github]  [pub]
Genotype-phenotype correlations

Legacy Tools
NAPA

NAPA

[github]  [pub]
Network analysis of multiple mutations

Legacy Tools
CRAVAT

CRAVAT

[url]  [pub]
Annotation of cancer somatic variants

Legacy Tools
MuPIT

MuPIT

[url]  [pub]
Visualize mutations on 3D protein structures

Legacy Tools
3D-CLUMP

3D-CLUMP

[github]  [pub]
Case-control clustering of variants in 3D

Software Tools
CHASM

CHASM

[pub]
Random Forest predicts driver missense mutations

Software Tools
TCRtoolkit

TCRtoolkit

[github]
Pipeline for bulk TCR repertoire analysis

Software Tools
SVCFit

SVCFit

[github]  [pub]
Clonal evolution of structural variants in cancer

Software Tools
PICTographPlus

PICTographPlus

[github]  [pub]
Deconvolute bulk tumor transcriptional clones

Software Tools