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Slavov Laboratory
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Slavov Laboratory
@slavovLab
We seek principles in the coordination among protein synthesis, metabolism, cell growth and differentiation PI: @slavov_n Videos: youtube.slavovlab.net
Boston, MA
slavovlab.net
Joined July 2020
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    Slavov Laboratory
    @slavovLab
    Aug 27, 2024
    We report many proteins not predicted by the genetic code. They are stable & abundant O( 10³ ) copies / cell. Generative mechanisms include codon-anticodon mismatches & RNA modifications. Their abundance depends on codon frequency & protein stability.
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    biorxiv.org
    Alternate RNA decoding results in stable and abundant proteins in mammals
    Amino acid substitutions may substantially alter protein stability and function, but the con-tribution of substitutions arising from alternate translation (deviations from the genetic code) is...
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    Slavov Laboratory
    @slavovLab
    Nov 25, 2023
    A good model for writing a research summary. Combine accessible intro and conclusion with a substantive summary.
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    Slavov Laboratory
    @slavovLab
    Oct 30, 2021
    Our protocol for single-cell proteomics by mass-spectrometry was just published in @NatureProtocols: nature.com/articles/s4159… | OA link: rdcu.be/cArfT
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    Slavov Laboratory
    @slavovLab
    Sep 24, 2023
    Sequencing human genomes & transcriptomes is relatively easy compared to sequencing proteomes. The reason stems in part from their respective sizes: ◼️The human proteome is huge. blog.slavovlab.net/2023/09/23/the…
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    Slavov Laboratory
    @slavovLab
    Aug 5, 2021
    A thoughtful highlight of single-cell proteomics in @naturemethods by @DrArunimaSingh. nature.com/articles/s4159…
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    Slavov Laboratory
    @slavovLab
    Nov 28, 2023
    We just shared a detailed protocol for highly parallel single-cell proteomics. It allows: ◼️Preparing simultaneously > 3,000 of cells ◼️Quantifying 3,000 - 3,700 proteins / human cell (< 5min). ◼️Counting O( 10⁷ ) peptide copies / cell. biorxiv.org/content/10.110…
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    Slavov Laboratory
    @slavovLab
    Apr 3, 2023
    Today @naturemethods published prioritized mass spectrometry proteomics. Applying it to single-cell proteomics (pSCoPE), we: ◼️Increased data completeness to 93% ◼️Doubled proteome coverage ◼️Increased the dynamic range nature.com/articles/s4159…
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    Slavov Laboratory
    @slavovLab
    Nov 5, 2021
    Proteomics should be sensitive, accurate, fast, robust & affordable. 👉 Welcome plexDIA! Proteins / sample: ~ 8,000 Sample size: 500 ng Samples / day: 48 (should be 72 with Evosep) MS system: 1st generation QE classic
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    biorxiv.org
    Increasing the throughput of sensitive proteomics by plexDIA
    Current mass-spectrometry methods enable high-throughput proteomics of large sample amounts, but proteomics of low sample amounts remains limited in depth and throughput. We aimed to increase the...
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    Slavov Laboratory
    @slavovLab
    Mar 21, 2022
    We always aimed to link single-cell protein measurements to cellular functions and regulatory mechanisms. This project was a major step for us in this directions, especially with the direct measurements proteolysis products: biorxiv.org/content/10.110… Data: scp.slavovlab.net/Huffman_et_al_…
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    Slavov Laboratory
    @slavovLab
    Jan 5, 2022
    Our first article published in 2022 is out in @PLOSBiology. Aptly, it starts from the beginning, with ideas that motivated us to develop single-cell proteomics technologies.
    journals.plos.org
    Learning from natural variation across the proteomes of single cells
    Biological functions arise from protein interactions, which are reflected in the natural variation of proteome configurations across individual cells. This Perspective article argues that emerging...
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    Slavov Laboratory
    @slavovLab
    Jul 28, 2024
    A new preprint: While analyzing proteomes of cells from mammalian tissues, @_AndrewLeduc identified protein leakage from permeabilized cells. We identified clear patterns that can be used to detect & mitigate this issue: biorxiv.org/content/10.110…
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    Slavov Laboratory
    @slavovLab
    Nov 14, 2020
    We are looking for students & postdocs to join our team slavovlab.net/people.htm#Pro… in #Boston. Projects include developing single-cell methods & applying them to new exciting problems center.single-cell.net/single-cell-pr… web.northeastern.edu/slavovlab/blog…
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    Slavov Laboratory
    @slavovLab
    Oct 14, 2024
    How are proteins regulated across single cells of human tissues ? We developed a Bayesian model (BayesPG) for inferring protein regulation from single-cell protein & RNA data. For 28 % of proteins, abundance differs significantly from ... 🧵
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    biorxiv.org
    Inferring post-transcriptional regulation within and across cell types in human testis
    Single-cell tissue atlases commonly use RNA abundances as surrogates for protein abundances. Yet, protein abundance also depends on the regulation of protein synthesis and degradation rates. To...
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    Slavov Laboratory
    @slavovLab
    Jul 15, 2022
    This @NatureBiotech publication is just a beginning. A beginning of an approach that we believe will drive major gains in the throughput, depths, and accessibility of single-cell proteomics. nature.com/articles/s4158…
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