Package: BiocFileCache 3.1.0
Lori Shepherd
BiocFileCache: Manage Files Across Sessions
This package creates a persistent on-disk cache of files that the user can add, update, and retrieve. It is useful for managing resources (such as custom Txdb objects) that are costly or difficult to create, web resources, and data files used across sessions.
Authors:
BiocFileCache_3.1.0.tar.gz
BiocFileCache_3.1.0.zip(r-4.6)BiocFileCache_3.1.0.zip(r-4.5)BiocFileCache_3.1.0.zip(r-4.4)
BiocFileCache_3.1.0.tgz(r-4.6-any)BiocFileCache_3.1.0.tgz(r-4.5-any)
BiocFileCache_3.1.0.tar.gz(r-4.6-any)BiocFileCache_3.1.0.tar.gz(r-4.5-any)
BiocFileCache_3.1.0.tgz(r-4.5-emscripten)
BiocFileCache.pdf |BiocFileCache.html✨
BiocFileCache/json (API)
NEWS
| # Install 'BiocFileCache' in R: |
| install.packages('BiocFileCache', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bioconductor/biocfilecache/issues
On BioConductor:BiocFileCache-3.1.0(bioc 3.23)BiocFileCache-3.0.0(bioc 3.22)
dataimportcore-packageu24ca289073
Last updated from:c4f8ba6e0a. Checks:1 WARNING, 9 OK. Indexed: yes.
| Target | Result | Total time | Artifact |
|---|---|---|---|
| bioc-checks | WARNING | 142 | |
| linux-devel-x86_64 | OK | 223 | |
| source / vignettes | OK | 226 | |
| linux-release-x86_64 | OK | 226 | |
| macos-devel-arm64 | OK | 137 | |
| macos-release-arm64 | OK | 110 | |
| windows-devel | OK | 184 | |
| windows-release | OK | 144 | |
| windows-oldrel | OK | 162 | |
| wasm-release | OK | 145 |
Exports:bfcaddbfccachebfccountbfcdownloadbfcinfobfcmetabfcmeta<-bfcmetalistbfcmetaremovebfcneedsupdatebfcnewbfcpathbfcquerybfcquerycolsbfcremovebfcridbfcrpathbfcsyncbfcupdateBiocFileCachecleanbfcexportbfcgetBFCOptionimportbfcmakeBiocFileCacheFromDataFramemakeCachedActiveBindingremovebfcsetBFCOptionshow
Dependencies:askpassbitbit64blobcachemclicpp11curlDBIdbplyrdplyrfastmapfilelockgenericsgluehttr2lifecyclemagrittrmemoiseopensslpillarpkgconfigplogrpurrrR6rappdirsrlangRSQLitestringistringrsystibbletidyrtidyselectutf8vctrswithr
BiocFileCache: Managing File Resources Across Sessions
Rendered fromBiocFileCache.Rmdusingknitr::rmarkdownon Jan 28 2026.Last update: 2025-08-28
Started: 2017-02-08
BiocFileCache Use Cases
Rendered fromBiocFileCache_UseCases.Rmdusingknitr::rmarkdownon Jan 28 2026.Last update: 2025-05-15
Started: 2024-10-02
BiocFileCache Troubleshooting
Rendered fromBiocFileCache_Troubleshooting.Rmdusingknitr::rmarkdownon Jan 28 2026.Last update: 2025-05-15
Started: 2024-10-02
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| BFCOption These functions help get and set an R variable CACHE that controls the default caching location. | BFCOption getBFCOption setBFCOption |
| BiocFileCache class | bfcadd bfcadd,BiocFileCache-method bfcadd,missing-method bfccache bfccache,BiocFileCacheBase-method bfccache,missing-method bfccount bfccount,BiocFileCacheBase-method bfccount,missing-method bfccount,tbl_bfc-method bfcdownload bfcdownload,BiocFileCache-method bfcdownload,missing-method bfcinfo bfcinfo,BiocFileCacheBase-method bfcinfo,missing-method bfcmeta bfcmeta,BiocFileCacheBase-method bfcmeta,missing-method bfcmeta<- bfcmeta<-,BiocFileCacheBase-method bfcmetalist bfcmetalist,BiocFileCacheBase-method bfcmetalist,missing-method bfcmetaremove bfcmetaremove,BiocFileCacheBase-method bfcmetaremove,missing-method bfcneedsupdate bfcneedsupdate,BiocFileCacheBase-method bfcneedsupdate,missing-method bfcnew bfcnew,BiocFileCache-method bfcnew,missing-method bfcpath bfcpath,BiocFileCacheBase-method bfcpath,missing-method bfcquery bfcquery,BiocFileCacheBase-method bfcquery,missing-method bfcquerycols bfcquerycols,BiocFileCacheBase-method bfcquerycols,missing-method bfcremove bfcremove,BiocFileCache-method bfcremove,missing-method bfcrid bfcrid,BiocFileCache-method bfcrid,BiocFileCacheReadOnly-method bfcrid,missing-method bfcrid,tbl_bfc-method bfcrpath bfcrpath,BiocFileCacheBase-method bfcrpath,missing-method bfcsync bfcsync,BiocFileCache-method bfcsync,missing-method bfcupdate bfcupdate,BiocFileCache-method bfcupdate,missing-method BiocFileCache BiocFileCache-class cleanbfc cleanbfc,BiocFileCache-method cleanbfc,missing-method exportbfc exportbfc,BiocFileCacheBase-method exportbfc,missing-method importbfc importbfc,character-method length,BiocFileCacheBase-method removebfc removebfc,BiocFileCache-method removebfc,missing-method show,BiocFileCacheBase-method [,BiocFileCache,character,missing-method [,BiocFileCache,missing,missing-method [,BiocFileCacheReadOnly,character,missing-method [,BiocFileCacheReadOnly,missing,missing-method [[,BiocFileCacheBase,character,missing-method [[<-,BiocFileCache,character,missing,character-method |
| Make BiocFileCache objects from an existing data.frame | makeBiocFileCacheFromDataFrame makeBiocFileCacheFromDataFrame,ANY-method |
| makeCachedActiveBinding | makeCachedActiveBinding |
