Package: UCSC.utils 1.7.1

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Hervé Pagès

UCSC.utils: Low-level utilities to retrieve data from the UCSC Genome Browser

A set of low-level utilities to retrieve data from the UCSC Genome Browser. Most functions in the package access the data via the UCSC REST API but some of them query the UCSC MySQL server directly. Note that the primary purpose of the package is to support higher-level functionalities implemented in downstream packages like GenomeInfoDb or txdbmaker.

Authors:Hervé Pagès [aut, cre]

UCSC.utils_1.7.1.tar.gz
UCSC.utils_1.7.1.zip(r-4.6)UCSC.utils_1.7.1.zip(r-4.5)UCSC.utils_1.7.1.zip(r-4.4)
UCSC.utils_1.7.1.tgz(r-4.6-any)UCSC.utils_1.7.1.tgz(r-4.5-any)
UCSC.utils_1.7.1.tar.gz(r-4.6-any)UCSC.utils_1.7.1.tar.gz(r-4.5-any)
UCSC.utils_1.7.1.tgz(r-4.5-emscripten)
UCSC.utils.pdf |UCSC.utils.html✨
UCSC.utils/json (API)
NEWS

# Install 'UCSC.utils' in R:
install.packages('UCSC.utils', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bioconductor/ucsc.utils/issues

On BioConductor:UCSC.utils-1.7.1(bioc 3.23)UCSC.utils-1.6.1(bioc 3.22)

infrastructuregenomeassemblyannotationgenomeannotationdataimportbioconductor-packagecore-package

9.46 score 1 stars 322 packages 10 scripts 74k downloads 7 exports 11 dependencies

Last updated from:54b281b5e7. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTotal timeArtifact
bioc-checksNOTE157
linux-devel-x86_64OK188
source / vignettesOK172
linux-release-x86_64OK172
macos-devel-arm64OK105
macos-release-arm64OK113
windows-develOK100
windows-releaseOK99
windows-oldrelOK109
wasm-releaseOK116

Exports:fetch_UCSC_track_dataget_organism_for_UCSC_genomeget_UCSC_chrom_sizeslist_UCSC_genomeslist_UCSC_tracksUCSC_dbselectUCSC.api.url

Dependencies:askpassBiocGenericscurlgenericshttrjsonlitemimeopensslR6S4Vectorssys

The UCSC.utils package

Hervé Pagès

Rendered fromUCSC.utils.Rmdusingknitr::rmarkdownon Feb 03 2026.

Last update: 2025-01-14
Started: 2024-03-15

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