MaxiPhi 0.4 FREE A similarity-free approach to compare the diversity of environmental viral communities Features Beta-diversity estimation (percent of species shared and permuted in abundance) Monte-Carlo simulation All reads a Read more Rating:
Grinder 0.5.4 FREE Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms. Features shotgun or amplicon (e.g. 16S rRNA) read libraries omic Read more Rating:
MIDesigner 0.1 FREE MIDesigner (MID Intelligent Designer) is a utility to design multiplex identifier (MID) primers for use in sequencing projects. Thus, it is similar in intent to Barcrawl. Features Minimum Hamming distance Specific star Read more Rating:
Circonspect 0.2.6 FREE Circonspect is a bioinformatic tool to produce contig spectra, useful for the estimating viral diversity in metagenomes. It uses an external assembly program and a bootstrap technique to automate the generation of contig... Read more Rating:
GAAS 0.17 FREE GAAS (Genome relative Abundance and Average Size) is a bioinformatic tool to calculate accurate community composition and average genome size in metagenomes by using BLAST, advanced parsing of hits and correction of... Read more Rating:
Getopt::Euclid 0.2.1 FREE Getopt::Euclid is a Perl module that uses your program's own documentation to create a command-line argument parser. This ensures that your program's documented interface and its actual interface always agree. Only... Read more Rating:
PHACCS 1.1.3 FREE PHACCS is a bioinformatic tool designed for a scientific public. It gives estimates of the structure and diversity of uncultured viral communities using metagenomic information. Read more Rating:
FastGroupII 0.1.0 FREE A web-based Perl tool for the dereplication of large 16S rDNA libraries. Read more Rating:
LIGR Assembler 2.05 FREE LIGR Assembler is a sequence assembly program. It was derived from TIGR Assembler and addresses some of TIGR Assembler's shortcomings. See the CHANGES file for details. Read more Rating:
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