The Electron Microscopy Data Bank (EMDB) is a public repository for cryogenic-sample Electron Microscopy (cryoEM) volumes and representative tomograms of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, helical reconstruction, electron tomography, subtomogram averaging, and electron crystallography. More...
As of 28 January 2026, EMDB contains 53722 entries (latest entries, trends).
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The EMDB and wwPDB have reached a historic milestone, releasing 10,000 EMDB entries in a single year!
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Q-score as a reliability measure for protein, nucleic acid and small-molecule atomic coordinate models derived from 3DEM maps
Grigore Pintilie, Chenghua Shao, Zhe Wang, Brian P Hudson, Justin W Flatt, Michael F Schmid, Kyle L Morris, Stephen K Burley, Wah Chiu. (2025) Acta Cryst D81: 410-422 doi: 10.1107/S2059798325005923
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A total of 2,540 respondants took the time to fill in this EMBL-EBI survey. We will learn how EMDB and other services like EMPIAR and PDB help you and this will help EMBL-EBI make the case for why open data resources are critical to life science research. Thank you for the incredible number of responses.
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Consensus olfactory receptor bmOR6A2 in complex with mini-Golf trimeric protein
Consensus olfactory receptor bmOR6A2 in complex with mini-Golf trimeric protein
Consensus olfactory receptor consOR6 bound to alpha-hexyl cinnamaldehyde and in complex with mini-Golf trimeric protein
Consensus olfactory receptor consOR6 in complex with Gs trimeric protein
Consensus olfactory receptor consOR6 in complex with mini-Golf trimeric protein
Structure of the H4.V variant nucleosome core particle from Trypanosoma brucei
Structure of the H3.V-H4.V variant nucleosome core particle from Trypanosoma brucei
Cryo-EM structure of Gi coupled Sphingosine 1-phosphate receptor bound with Ponesimod
Cryo-EM structure of Gi coupled Sphingosine 1-phosphate receptor bound with HY-X-1011
Cryo-EM structure of Gi coupled Sphingosine 1-phosphate receptor bound with CYM5442
Cryo-EM structure of Gi coupled Sphingosine 1-phosphate receptor bound with SAR247799
Cryo-EM structure of human V1aR bound with atosiban at a resolution of 2.8 angstrom
Stable open state sheep connexin-46/50 in DMPC nanodiscs at neutral pH
Destabilized open state sheep connexin-46 in DMPC nanodiscs at neutral pH
Stable open state sheep connexin-46/50 in DMPC nanodiscs at low pH
Asymmetrically gated state sheep connexin-46/50 in DMPC nanodiscs at low pH
Destabilized open state sheep connexin-46/50 in DMPC nanodiscs at low pH
Cryo-EM structure of SARS-CoV-2 JN.1 RBD in complex with F61R2-780 Fab
Cryo-EM structure of SARS-CoV-2 JN.1 spike glycoprotein in complex with F61R2-780 Fab
Cryo-EM structure of SARS-CoV-2 KP.3.1.1 RBD in complex with F61R2-780 Fab
Cryo-EM structure of SARS-CoV-2 KP.3.1.1 spike glycoprotein in complex with F61R2-780 Fab
Local refinement of stacked like DDB1-DDA1-DET1-Ube2e2-COP1 complex (layer 1)
Local refinement of stacked like DDB1-DDA1-DET1-Ube2e2-COP1 complex (layer 2)
Consensus refinement: Ternary complex of the human 20S proteasome in complex with Importin-9 and two homo dimers of Akirin-2. Focussed refinement
Cryo-EM structure of the Chromera velia PSI supercomplex at 1.84 Angstrom resolution
Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs
Local Refinement of human M4 muscarinic acetylcholine receptor G protein complex bound to selective PAM Emraclidine
Composite map: Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2
Structural characterisation of chromatin remodelling intermediates supports linker DNA dependent product inhibition as a mechanism for nucleosome spacing.
Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2 - focussed refinement on Importin-9 and Akirin-2
Structural characterisation of chromatin remodelling intermediates supports linker DNA dependent product inhibition as a mechanism for nucleosome spacing.
Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2 - focussed refinement on the alpha subunits, Ipo-9 and Ak2
Cryo-EM structure of the catalytic core of human telomerase at the elongation state of the repeat addition cycle
Cryo-EM structure of the catalytic core of human telomerase at the initiation state of the repeat addition cycle
Cryo-EM structure of the catalytic core of human telomerase at the pre-termination state of the repeat addition cycle
Asymmetric hexameric MmpS4-MmpL4 complex from Mycobacterium tuberculosis with "short" coiled-coil domain
Symmetric hexameric MmpS4-MmpL4 complex from Mycobacterium tuberculosis
Asymmetric hexameric MmpS4-MmpL4 complex from Mycobacterium tuberculosis with "long" coiled-coil domain
6-fold-symmetric reconstruction focused on the middle part of the bacteriophage T4 tail
Cryo-EM structure of SARS-CoV-2 nsp10-nsp14 (E191A) in complex with T20P14-S complex, monomeric form
Cryo-EM structure of SARS-CoV-2 nsp10-nsp14 (E191A) in complex with T20P14-S complex, tetrameric form
Cryo-EM structure of SARS-CoV-2 nsp10-nsp14 (E191A) in complex with T20P14-B complex, protomer A focused refinement
Cryo-EM structure of SARS-CoV-2 nsp10-nsp14 (E191A) in complex with T20P14-B complex, dimeric form
6-fold-symmetric reconstruction focused on the bacteriophage T4 baseplate
6-fold-symmetric reconstruction focused on the bacteriophage T4 neck region
Structure of the bacteriophage T4 portal-neck-tail connector complex
In situ cryo-electron tomogram of 4days WT nucleus (trimer close to NE)
Cryo-EM structure of human lipid phosphate phosphatase 1 complexed with PO4 in nanodiscs
Twenty-two polymer Msp1 from S.cerevisiae(with a catalytic dead mutation) in complex with an unknown peptide substrate
Sixteen polymer Msp1 from S.cerevisiae (with a catalytic dead mutation) in complex with an unknown peptide substrate
Pentamer Msp1 from S.cerevisiae (with a catalytic dead mutation) in complex with an unknown peptide substrate state2
STRUCTURE OF UNSTACKED C2S2-TYPE PSII-LHCII SUPERCOMPLEX FROM PISUM SATIVUM
Mus musculus TASK-1 (KCNK3) in MSP1E3D1 lipid nanodisc at pH 6.0 and 100 mM KCl
C3 reconstruction of the thermophilic bacteriophage P74-26 Capsid-less Neck
C12 reconstruction of the thermophilic bacteriophage P74-26 Collar-less Neck
C1 reconstruction of the thermophilic bacteriophage P74-26 Portal and Portal Vertex
ML418 bound inwardly rectifying potassium channel Kir7.1 R162Q mutant
Motor domain of human dynein-1 in pre-power stroke bound to dynactin-p150glued-CC1B-ICD and LIS1
Mitochondrial Creatine Kinase in complex with ADP, creatine, and uncompetitive inhibitor uci
Asymmetric reconstruction of filled phage capsids lacking neck and tail
Motor domains of phi-like human dynein-1 bound to dynactin-p150glued and LIS1
Motor domain of human dynein-1 in pre-power stroke bound to dynactin-p150glued-CC1B and LIS1
12.7-Angstrom resolution structure of bacteriophage Sf6 in the C1 symmetry by cryo-electron tomography and sub-tomogram averaging with 538 particles reveal the tail appendage
Asymmetric reconstruction of filled phage capsids with broken tails
Mitochondrial Creatine Kinase in complex with ADP and uncompetitive inhibitor uci
Full-length human cytoplasmic dynein-1 in phi-like state bound to dynactin-p150glued and LIS1
C5 reconstruction of the thermophilic bacteriophage P74-26 Portal Vertex
Composite reconstruction of the thermophilic bacteriophage P74-26 Neck and Portal Vertex
Cryo-EM structure of the DDB1/CRBN-MRT-5702-G3BP2 ternary complex
Dynactin and dynein-1 tail region of dynein-dynactin complex on microtubule in the presence of LIS1
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (head structure)
9.1-Angstrom resolution structure of the portal protein core of bacteriophage Sf6 by cryo-electron tomography and sub-tomogram averaging with 538 particles
Human Oct4 bound to nucleosome reconstituted with human histones and 182 bp human LIN28B sequence
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (body structure)
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (consensus structure)
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (substrate structure)
Focused refinement map of the human M4 muscarinic acetylcholine receptor bound to the bitopic agonist C110
Human M4 muscarinic acetylcholine receptor Gi1 complex (mini-Gsi chimera) bound to the bitopic agonist C110
cryo-ET subtomogram-averaged structure of mouse heavy-chain apoferritin resolved at 2.71 Angstroms
Human TRPM4 ion channel in MAASTY copolymer lipid nanodisc in a calcium-bound state
Open state of A8 gpJ 713 central tail fiber with OmpC G17 from E. coli EDL933
Methanosarcina acetivorans 70S ribosome in complex with SriA and SriB composite map
Methanosarcina acetivorans 70S ribosome in complex with SriD composite map
Methanosarcina acetivorans 70S ribosome in complex with SriC and SriD 30S focused refinement
Methanosarcina acetivorans 70S ribosome in complex with SriC and SriD 30S head focused refinement
Methanosarcina acetivorans 70S ribosome in complex with SriC and SriD consensus map
Methanosarcina acetivorans 70S ribosome in complex with SriA and SriB consensus map
Methanosarcina acetivorans 70S ribosome in complex with SriA and SriB 50S focused refinement
Methanosarcina acetivorans 70S ribosome in complex with SriD 30S focused refinement
Methanosarcina acetivorans 70S ribosome in complex with SriC and SriD 50S focused refinement
Methanosarcina acetivorans 70S ribosome in complex with SriA and SriB 30S focused refinement
Methanosarcina acetivorans 70S ribosome in complex with SriD consensus map
Methanosarcina acetivorans 70S ribosome in complex with SriD 50S focused refinement
Methanosarcina acetivorans 70S ribosome in complex with SriA and SriB 30S head focused refinement
Methanosarcina acetivorans 70S ribosome in complex with SriC and SriD composite map
Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain
CryoEM structure of Aldehyde dehydrogenase from Francisella tularensis subsp. tularensis at 3.03A resolution
Cryo-EM Structure of Ryanodine Receptor 1: Drug Bound Open Conformation Composite Map
Twisted arrangement of the HDV 311-RNP, Multibody refinement, Body 1
Consensus olfactory receptor bmOR6A2 in complex with mini-Golf trimeric protein
Consensus olfactory receptor consOR6 in complex with mini-Golf trimeric protein
