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baker-laboratory

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  1. RoseTTAFold-All-Atom RoseTTAFold-All-Atom Public

    Python 788 142

  2. rf_diffusion_all_atom rf_diffusion_all_atom Public

    Public RFDiffusionAA repo

    Python 464 88

  3. PLACER PLACER Public

    PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.

    Python 226 32

  4. CA_RFDiffusion CA_RFDiffusion Public

    Python 77 14

  5. NA-MPNN NA-MPNN Public

    Python 58 12

  6. Metallohydrolase_Enzyme_Design Metallohydrolase_Enzyme_Design Public

    Official GitHub repository for the manuscript entitled "Computational Design of Metallohydrolases" by Kim, Woodbury, & Ahern et al. published in Nature. This notebook contains (1) tutorials on how …

    Jupyter Notebook 20 4

Repositories

Showing 10 of 10 repositories
  • worms Public

    working version of the worms code that can be compiled as of 2026-02-13

    baker-laboratory/worms’s past year of commit activity
    Python 0 0 0 0 Updated Feb 14, 2026
  • Metallohydrolase_Enzyme_Design Public

    Official GitHub repository for the manuscript entitled "Computational Design of Metallohydrolases" by Kim, Woodbury, & Ahern et al. published in Nature. This notebook contains (1) tutorials on how to use RFdiffusion2 for enzyme design, (2) a demo pipeline for metallohydrolase design, and (3) data, sequences, and design models from the manuscript.

    baker-laboratory/Metallohydrolase_Enzyme_Design’s past year of commit activity
    Jupyter Notebook 20 MIT 4 1 0 Updated Dec 4, 2025
  • NA-MPNN Public
    baker-laboratory/NA-MPNN’s past year of commit activity
    Python 58 12 1 0 Updated Nov 7, 2025
  • PLACER Public

    PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.

    baker-laboratory/PLACER’s past year of commit activity
    Python 226 32 7 1 Updated Nov 5, 2025
  • baker-laboratory/CA_RFDiffusion’s past year of commit activity
    Python 77 MIT 14 9 0 Updated Jun 4, 2025
  • baker-laboratory/RoseTTAFold-All-Atom’s past year of commit activity
    Python 788 142 108 (1 issue needs help) 6 Updated May 28, 2025
  • ipd Public

    Various base libraries for code at the IPD

    baker-laboratory/ipd’s past year of commit activity
    C++ 5 Apache-2.0 1 1 2 Updated May 2, 2025
  • mlb Public
    baker-laboratory/mlb’s past year of commit activity
    Python 0 0 0 0 Updated Mar 8, 2025
  • ppp Public

    Prettier Protein Project

    baker-laboratory/ppp’s past year of commit activity
    Python 1 Apache-2.0 0 0 1 Updated Nov 13, 2024
  • rf_diffusion_all_atom Public

    Public RFDiffusionAA repo

    baker-laboratory/rf_diffusion_all_atom’s past year of commit activity
    Python 464 88 24 2 Updated Jul 9, 2024

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