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Using photon absorption remote sensing to image tissue
💡
Using photon absorption remote sensing to image tissue
8 followers · 1 following

Achievements

Achievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

Achievements

Achievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

Highlights

  • Pro

Organizations

@PhotoMedicineLab @UBC-SBME

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gitUmaru/README.md
Shows a black logo in light color mode and a white one in dark color mode.

Hey! 👋

My name is Muhammad Umar Ali and I am currently a PhD Student at the University of Waterloo. I currently research how we can engineer methods to record light-matter interactions for imaging tissue at the microscopic scale. I did my undergraduate training at the University of British Columbia with a concentration in bioinformatics.

⚡ One line that describes me best?

A wannabe scientist who pretends to know what hes doing and sometime codes too.

📚 My other interests

Some of my non-academic interests include: literature, entrepeneurship and dungeons & dragons! In an effort to become a more "learned person", I'm trying to write more so I've started a substack blog, please check it out @ umara.substack.com.

Pinned Loading

  1. skin-color-estimation skin-color-estimation Public

    An implementation of two academic papers on determining skin colour pixels of images. Used to determine individual typology angle (ITA).

    MATLAB 6 1

  2. PixGen PixGen Public

    We have decided to make a web application where clinicians can decide to add and request images of skins lesions from POC.

    Python 1 1

  3. Pathomatic Pathomatic Public

    This is a git repository for my NSERC USRA where I try to build an android app that looks for cancerous portions of a cell given a pathology slide sample. The phone attaches to the end of a microsc…

    Dart 3 2

  4. Open-Biopipeline Open-Biopipeline Public

    Open Biopipeline is an open source bioinformatics tool for general and broad purposes, specifically the goal of this project is to develop a tool for researchers or students to use in order to inve…

    Python 2

  5. gitUmaru.github.io gitUmaru.github.io Public

    Short portfolio of some projects

    HTML

  6. Modelling Chemical Kinetics --- This... Modelling Chemical Kinetics --- This short script simply models a very simple system of some chemical compound c_{A} and c_{B} that is constrained to c_{A}' = -c_{B}' = -k c_{A}. In other words, the first order chemical reaction is: A -> B. I am specifically modeling the kinetics of an isomerization reaction, the decay of 13-cis-retinal to all-trans-retinal.
    1 
    import numpy as np
    2 
    import matplotlib.pyplot as plt
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    from scipy.integrate import odeint
    
              
    
              
    
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    # Something to note is that this is from the old API of scipy and its better to use their new solve_ivp() method instead.
    
              
    
          
    
    
    
  
    

    7.