Public repositories of the Hamker lab

submitted

Gönner, L., Syniawa, E., Hamker, F. H. (2026)
Resolving Discrete vs. Continuous Dynamics in Hippocampal Place-Cell Sequences: A Methodological Approach to Decoding Sequential Activity
code

2026

Habibi, S. H., Bergelt, J., Techmann, M., Hamker, F.H. (2026)
Influence of Tokenization Strategies on the Prediction of CAD Model Descriptions
International Symposium on Hybrid Intelligence in Product and Production Engineering (accepted)
code

2025

Bergelt, J., Hamker, F.H. (2025)
Perisaccadic attentional updating in Area V4: A neuro-computational approach
European Journal of Neuroscience (EJN), 62(12):e70354. doi:10.1111/ejn.70354
code

Stocks, N., Hamker, F.H. (2025)
Bridging Conflicting Views on Eye-Position Signals: A Neurocomputational Approach to Perisaccadic Perception
European Journal of Neuroscience (EJN), 62(3):e70207. doi:10.1111/ejn.70207.
code

Larisch, R., Hamker, F.H. (2025)
A systematic analysis of the joint effects of ganglion cells, lagged LGN cells, and intercortical inhibition on spatiotemporal processing and direction selectivity
Neural Networks, 186:107273. doi:10.1016/j.neunet.2025.107273.
code

Maith, O., Apenburg, D., Hamker, F. H. (2025)
Pallidal deep brain stimulation enhances habitual behavior in a neuro-computational basal ganglia model during a reward reversal learning task
European Journal of Neuroscience, Volume 61:e70130 doi:10.1111/ejn.70130
code

2024

Fietzek, T., Ruff, C., Hamker. F.H. (2024)
A Brain-Inspired Model of Reaching and Adaptation on the iCub Robot
2024 IEEE International Symposium on Robotic and Sensors Environments (ROSE). p. 1-7. doi:10.1109/ROSE62198.2024.10591174.
code

2023

Larisch, R., Vitay, J., Hamker, F. H. (2023)
Detecting Anomalies in System Logs With a Compact Convolutional Transformer
IEEE Access, Volume 11 doi:10.1109/ACCESS.2023.3323252
code

Larisch, R., Berger, L., Hamker, F. H. (2023)
Exploring the Role of Feedback Inhibition for the Robustness Against Corruptions on Event-Based Data
ICANN 2023. LNCS Volume 14261. Springer, Cham. doi:10.1007/978-3-031-44198-1_17
code

Burkhardt, M., Bergelt, J., Gönner, L., Dinkelbach, H.Ü., Beuth, F., Schwarz, A., Bicanski, A., Burgess, N., Hamker, F. H. (2023)
A Large-scale Neurocomputational Model of Spatial Cognition Integrating Memory with Vision
Neural Networks, 167:473-488. doi:10.1016/j.neunet.2023.08.034
code

Baladron, J., Vitay, J., Fietzek, T. and Hamker, F. H. (2023)
The contribution of the basal ganglia and cerebellum to motor learning: a neuro-computational approach
PLoS Comput Biol 19(4): e1011024. doi:10.1371/journal.pcbi.1011024
code

Maith, O., Baladron, J., Einhäuser, W., Hamker, F. H. (2023)
Exploration behavior after reversals is predicted by STN-GPe synaptic plasticity in a basal ganglia model
iScience 26(5). doi:10.1016/j.isci.2023.106599
code

2022

Dinkelbach, H.Ü, Bouhlal, B.-E., Vitay, J., Hamker, F.H. (2022)
Auto-selection of an Optimal Sparse Matrix Format in the Neuro-simulator ANNarchy
Frontiers in Neuroinformatics, 16:877945. doi:10.3389/fninf.2022.877945
code

Maith, O., Dinkelbach, H.Ü, Baladron, J., Vitay, J., Hamker, F.H. (2022)
BOLD monitoring in the neural simulator ANNarchy
Frontiers in Neuroinformatics, 16. doi:10.3389/fninf.2022.790966
code

2021

Larisch, R., Teichmann, M., Gönner, L., Hamker, F.H. (2021)
Sensory coding and contrast invariance emerge from the control of plastic inhibition over emergent selectivity
PLOS Computational Biology, 17(11):e1009566. doi:10.1371/journal.pcbi.1009566
code

Maith, O., Schwarz, A., Hamker, F.H. (2021)
Optimal Attention Tuning in a neuro-computational Model of the Visual Cortex - Basal Ganglia - Prefrontal Cortex Loop
Neural Networks, 142:534-547. doi:10.1016/j.neunet.2021.07.008
code

Teichmann, M., Larisch, R., Hamker, F.H. (2021)
Performance of biologically grounded models of the early visual system on standard object recognition tasks
Neural Networks, 144:210-228. doi:10.1016/j.neunet.2021.08.009
code

2020

Goenner, L., Maith, O., Koulouri, I., Baladron, J., Hamker, F.H. (2020)
A spiking model of basal ganglia dynamics in stopping behavior supported by Arkypallidal neurons
European Journal of Neuroscience, 53(7):2296-2321. doi:10.1111/ejn.150862
code

2019

Bergelt, J., Hamker, F.H. (2019)
Spatial updating of attention across eye movements: A neuro-computational approach
Journal of Vision, 19(7):10, 1-23. doi:10.1167/19.7.10
code

Dinkelbach, H.Ü., Vitay, J., Hamker, F.H. (2019)
Scalable simulation of rate-coded and spiking neural networks on shared memory systems
Conference on Cognitive Computational Neuroscience. 13-16 September 2019, Berlin, Germany. doi:10.32470/CCN.2019.1109-0
code

Schmid, K., Vitay, J., Hamker, F. H. (2019)
Forward Models in the Cerebellum using Reservoirs and Perturbation Learning
Conference on Cognitive Computational Neuroscience. 13-16 September 2019, Berlin, Germany. doi:10.32470/CCN.2019.1139-0
code

2017

Lorenz Gönner, Julien Vitay, and Fred H. Hamker (2017).
Predictive Place-Cell Sequences for Goal-Finding Emerge from Goal Memory and the Cognitive Map: A Computational Model.
Frontiers in Computational Neuroscience 11:84. doi:10.3389/fncom.2017.00084
code

2016

Julien Vitay (2016)
[Re] Robust timing and motor patterns by taming chaos in recurrent neural networks
Rescience, 2(1). doi:10.5281/zenodo.159545
code

2014

Julien Vitay and Fred H. Hamker (2014)
Timing and expectation of reward: a neuro-computational model of the afferents to the ventral tegmental area
Frontiers in Neurorobotics. 8:4. doi:10.3389/fnbot.2014.00004
code

Miscellaneous

ANNarchy (Artificial Neural Networks architect) neuro-simulator.
code

Contextual Navigation Framework of the EU-funded CAVAA project
code

Mesh regression library of the BMBF project ML@Karoprod.
code

Microcredential "Deep Learning for Practitioners"
code

Neurobotics summer school 2022.
code

OnShape-CAD-Parser
code