Package: microhaplot 1.0.2

microhaplot: Microhaplotype Constructor and Visualizer

A downstream bioinformatics tool to construct and assist curation of microhaplotypes from short read sequences.

Authors:Thomas Ng [aut, cre]

microhaplot_1.0.2.tar.gz
microhaplot_1.0.2.zip(r-4.6)microhaplot_1.0.2.zip(r-4.5)microhaplot_1.0.2.zip(r-4.4)
microhaplot_1.0.2.tgz(r-4.6-any)microhaplot_1.0.2.tgz(r-4.5-any)
microhaplot_1.0.2.tar.gz(r-4.6-any)microhaplot_1.0.2.tar.gz(r-4.5-any)
microhaplot_1.0.2.tgz(r-4.5-emscripten)
microhaplot.pdf |microhaplot.html✨
microhaplot/json (API)
NEWS

# Install 'microhaplot' in R:
install.packages('microhaplot', repos = c('https://ngthomas.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ngthomas/microhaplot/issues

On CRAN:

Conda:

amplicon-sequencingmicrohaplot-shinyshinyvcf

6.10 score 20 stars 21 scripts 170 downloads 2 mentions 3 exports 72 dependencies

Last updated from:42c9ed924e. Checks:7 ERROR, 2 OK. Indexed: yes.

TargetResultTotal timeArtifact
linux-devel-x86_64ERROR122
source / vignettesOK184
linux-release-x86_64ERROR134
macos-devel-arm64ERROR107
macos-release-arm64ERROR140
windows-develERROR88
windows-releaseERROR168
windows-oldrelERROR149
wasm-releaseOK129

Exports:mvShinyHaplotprepHaplotFilesrunShinyHaplot

Dependencies:base64encbslibcachemclicommonmarkcpp11crosstalkdigestdplyrDTevaluatefarverfastmapfontawesomefontBitstreamVerafontLiberationfontquiverfsgdtoolsgenericsggiraphggplot2gluegtablegtoolshighrhtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteknitrlabelinglaterlazyevallifecyclemagrittrmemoisemimeotelpillarpkgconfigpromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownS7sassscalesshinyshinyBSshinyWidgetssourcetoolsstringistringrsystemfontstibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyaml

An Introduction to microhaplot data preparation

Thomas Ng and Eric C. Anderson

Rendered frommicrohaplot-data-prep.Rmdusingknitr::rmarkdownon Feb 05 2026.

Last update: 2019-05-28
Started: 2019-04-11

microhaplot walkthrough

Thomas Ng and Eric C. Anderson

Rendered frommicrohaplot-walkthrough.Rmdusingknitr::rmarkdownon Feb 05 2026.

Last update: 2019-09-19
Started: 2019-04-04

Package Troubleshoot

Thomas Ng and Eric C. Anderson

Rendered fromtroubleshoot.Rmdusingknitr::rmarkdownon Feb 05 2026.

Last update: 2017-06-30
Started: 2017-06-30

Image

  • Image