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@uw-loci

UW-Madison LOCI

Laboratory for Optical and Computational Instrumentation: the UW-Madison research lab of Kevin Eliceiri

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  1. curvelets curvelets Public

    Curvelet-Transform based fibrillar collagen quantification (CurveAlign and CT-FIRE)

    MATLAB 28 18

  2. loci-scripts loci-scripts Public

    Scripts and macros for LOCI scientific problems

    Shell

  3. visbio-imagej visbio-imagej Public

    ImageJ plugins for 3D visualization using the VisAD toolkit

    Java 1

  4. misc-plugins misc-plugins Public

    Miscellaneous ImageJ plugins

    Java 2 1

  5. search-image-sc search-image-sc Public

    Image.sc search service

    Python

Repositories

Showing 10 of 158 repositories
  • qupath-catalog-mikenelson Public

    QuPath extensions by Mike Nelson at LOCI

    uw-loci/qupath-catalog-mikenelson's past year of commit activity
    Python 3 0 0 0 Updated Sep 26, 2026
  • qupath-extension-project-metadata-browser Public

    Browse, filter, and edit metadata for all images in a QuPath project.

    uw-loci/qupath-extension-project-metadata-browser's past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Sep 26, 2026
  • qupath-catalog-qpsc Public

    QuPath extension catalog for QPSC microscope control system

    uw-loci/qupath-catalog-qpsc's past year of commit activity
    Python 0 0 0 0 Updated Sep 26, 2026
  • qupath-extension-cell-analysis-tools Public

    Python-powered clustering and phenotyping for highly multiplexed imaging data in QuPath

    uw-loci/qupath-extension-cell-analysis-tools's past year of commit activity
    Java 8 Apache-2.0 1 1 0 Updated Sep 26, 2026
  • qupath-extension-tiles-to-pyramid Public

    An extension to allow the creation of a pyramidal image file from individual tiles, based on known tile positions.

    uw-loci/qupath-extension-tiles-to-pyramid's past year of commit activity
    Java 1 Apache-2.0 1 0 3 Updated Sep 26, 2026
  • qupath-extension-dl-pixel-classifier Public

    QuPath extension for deep learning pixel classification with Python training backend

    uw-loci/qupath-extension-dl-pixel-classifier's past year of commit activity
    Java 1 Apache-2.0 0 1 5 Updated Sep 26, 2026
  • cluster3d-core Public

    Apache-2.0 shared 3D point-cloud viewer library for QuPath (embeddable Cluster3DNavigatorPane; used by cluster-3d-navigator + QP-CAT)

    uw-loci/cluster3d-core's past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Sep 25, 2026
  • mm-workshop-i2k-bina-2026 Public

    Micro-Manager workshop at I2KxBINA2026

    uw-loci/mm-workshop-i2k-bina-2026's past year of commit activity
    0 0 0 1 Updated Sep 25, 2026
  • qupath-extension-qpsc Public

    Java based extension for QuPath allowing control of a microscope through MicroManager

    uw-loci/qupath-extension-qpsc's past year of commit activity
    Java 1 Apache-2.0 0 0 5 Updated Sep 25, 2026
  • qupath-extension-polyline-wand Public

    Brush/wand-style editor for QuPath line and polyline annotations. Three engines: direct vertex push, area-proxy skeletonize, arc-length displacement field.

    uw-loci/qupath-extension-polyline-wand's past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Sep 24, 2026
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