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Home: pybel.github.io
GitHub: github.com/pybel
Docs: pybel.readthedocs.org
Paper: academic.oup.com/bioinformatics…
PyBEL
@pybelbio
Python software for the Biological Expression Language, integrating biomedical knowledge, and systems biology
- Welcome BioPAX to the Python scientific ecosystem :))We've been developing PyBioPAX, a native Python object model for BioPAX Level 3 with parsing, serializing, and traversal of BioPAX models. 🚀 Install: pip install pybiopax 🖥️ Code: github.com/indralab/pybio… 📖 Docs: pybiopax.rtfd.io
- Useful for biologists making the transition to AI/ML - this is written for newcomersAre you new to knowledge graph embedding models? Are you confused about loss functions? We wrote a nice introduction for you: pykeen.readthedocs.io/en/latest/refe…
- For BEL users who are embedding their networks for drug repositioning, disease-target prioritization, etc should get excited!Earlier this week, we had our 2021 kick-off meeting 🎉🎊 The first part of the agenda for this year: - improvements to our base classes to support development of novel KGE models - more community outreach - faster training - faster evaluation - more ways to embed *your* data
- We've been on break from PyBEL the last few months because we're working on something great... lots of updates on improvements to the biosemantics supporting Biological Expression Language coming in 2021
