Package: JBrowseR 0.12.0

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Colin Diesh

JBrowseR: An R Interface to the JBrowse 2 Genome Browser

Provides an R interface to the JBrowse 2 genome browser. Enables embedding a JB2 genome browser in a Shiny app or R Markdown document. The browser can also be launched from an interactive R console. The browser can be loaded with a variety of common genomics data types, and can be used with a custom theme.

Authors:Elliot Hershberg [aut], Colin Diesh [aut, cre], the JBrowse 2 Team [aut]

JBrowseR_0.12.0.tar.gz
JBrowseR_0.12.0.zip(r-4.7-any)JBrowseR_0.12.0.zip(r-4.6-any)JBrowseR_0.12.0.zip(r-4.5-any)
JBrowseR_0.12.0.tgz(r-4.6-any)JBrowseR_0.12.0.tgz(r-4.5-any)
JBrowseR_0.12.0.tar.gz(r-4.7-any)JBrowseR_0.12.0.tar.gz(r-4.6-any)
JBrowseR_0.12.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
JBrowseR/json (API)

# Install 'JBrowseR' in R:
install.packages('JBrowseR', repos = c('https://gmod.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/gmod/jbrowser/issues

Pkgdown/docs site:https://gmod.github.io

On CRAN:

Conda:

genomicsreactjsrmarkdownshinyvisualization

7.97 score 40 stars 1 packages 52 scripts 220 downloads 8 exports 26 dependencies

Last updated from:4656f35a68. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK151
source / vignettesOK204
linux-releaseOK131
macos-releaseOK163
macos-oldrelOK192
windows-develOK74
windows-releaseOK80
windows-oldrelOK79
wasm-releaseOK140

Exports:JBrowseRJBrowseRAppJBrowseRAppOutputJBrowseROutputrenderJBrowseRrenderJBrowseRApptrack_data_frameupdate_location

Dependencies:base64encbslibcachemclidigestevaluatefastmapfontawesomefshighrhtmltoolshtmlwidgetsjquerylibjsonliteknitrlifecyclememoisemimeR6rappdirsrlangrmarkdownsasstinytexxfunyaml

Comparing genomes: linear synteny and dotplots
Describe the four assemblies | One all-vs-all track between them | Stack them in a synteny view | The same PAF as a dotplot | Building the PAF from your own genomes
Rendered fromcomparative-synteny.Rmdusingknitr::rmarkdown

Last update: 2026-08-27
Started: 2026-07-18

Introduction to JBrowseR
The one-liner | Adding tracks | A gallery | Where to next
Rendered fromJBrowseR.Rmdusingknitr::rmarkdown

Last update: 2026-08-27
Started: 2021-02-16

Hosting data for JBrowseR
Server requirements | Viewing local files
Rendered fromcreating-urls.Rmdusingknitr::rmarkdown

Last update: 2026-08-12
Started: 2021-02-18

Custom browser tutorial
Describe the assembly | Add tracks | Enable gene-name search | Put it together | Show results computed in R | Reacting to clicks in Shiny
Rendered fromcustom-browser-tutorial.Rmdusingknitr::rmarkdown

Last update: 2026-08-06
Started: 2021-02-17

Advanced JSON tutorial
When to use it | From a config file | From an R list
Rendered fromjson-tutorial.Rmdusingknitr::rmarkdown

Last update: 2026-08-04
Started: 2021-02-18

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