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Kirchhausen Lab

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  1. incasem incasem Public

    Automated Segmentation of cellular substructures in Electron Microscopy

    Python 18 2

  2. Cryosamba Cryosamba Public

    Python 14 3

  3. spatialdino spatialdino Public

    Python 10 1

  4. llsm_viewer llsm_viewer Public

    TypeScript 3 1

  5. gc_segment gc_segment Public

    Annotation-based organelle segmentation using graph cuts

    Python 2

  6. Adams-Very-Cool-Viewer-AVCV Adams-Very-Cool-Viewer-AVCV Public

    Interactive imaging viewer for multi-channel time-series microscopy data

    Python 1

Repositories

Showing 10 of 21 repositories
  • mirante4d_legacy Public

    Native desktop viewer for large 4D microscopy datasets (pre-alpha).

    kirchhausenlab/mirante4d_legacy's past year of commit activity
    Rust 1 MIT 0 0 0 Updated Aug 16, 2026
  • spatialdino Public
    kirchhausenlab/spatialdino's past year of commit activity
    Python 10 MIT 1 0 5 Updated Jun 25, 2026
  • llsm_viewer Public
    kirchhausenlab/llsm_viewer's past year of commit activity
    TypeScript 3 1 0 0 Updated Apr 28, 2026
  • pikfyve_endosome_fusion_mechanics Public

    MATLAB code for 3D particle track visualization, MSD analysis, and simulations to quantify viral motion in expanded endosomes upon PIKfyve inhibition.

    kirchhausenlab/pikfyve_endosome_fusion_mechanics's past year of commit activity
    MATLAB 0 MIT 0 0 0 Updated Apr 17, 2026
  • incasem Public

    Automated Segmentation of cellular substructures in Electron Microscopy

    kirchhausenlab/incasem's past year of commit activity
    Python 18 BSD-3-Clause 2 2 0 Updated Jan 28, 2026
  • Adams-Very-Cool-Viewer-AVCV Public

    Interactive imaging viewer for multi-channel time-series microscopy data

    kirchhausenlab/Adams-Very-Cool-Viewer-AVCV's past year of commit activity
    Python 1 MIT 0 0 0 Updated Aug 28, 2025
  • Cryosamba Public
    kirchhausenlab/Cryosamba's past year of commit activity
    Python 14 MIT 3 4 2 Updated Aug 14, 2025
  • nuclei-segmenter Public

    Pipeline for segmenting nuclei and masking corresponding fluorescent signals

    kirchhausenlab/nuclei-segmenter's past year of commit activity
    Python 0 0 0 0 Updated Jul 15, 2025
  • TKLabWIKI Public
    kirchhausenlab/TKLabWIKI's past year of commit activity
    HTML 0 0 0 0 Updated Mar 26, 2025
  • funlib.learn.torch_TKLAB Public Forked from funkelab/funlib.learn.torch

    Pytorch Models

    kirchhausenlab/funlib.learn.torch_TKLAB's past year of commit activity
    Python 0 12 0 0 Updated Oct 1, 2024
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