samtools

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1. samtools samtools Public

   Tools (written in C using htslib) for manipulating next-generation sequencing data

   C 2k 617

2. htslib htslib Public

   C library for high-throughput sequencing data formats

   C 949 475

3. bcftools bcftools Public

   This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

   C 891 277

4. hts-specs hts-specs Public

   Specifications of SAM/BAM and related high-throughput sequencing file formats

   TeX 712 180

5. htsjdk htsjdk Public

   A Java API for high-throughput sequencing data (HTS) formats.

   Java 303 243

6. tabix tabix Public archive

   Note: tabix and bgzip binaries are now part of the HTSlib project.

   C 92 38