R-universe - mstackhouse (Mike Stackhouse)

Tplyr - A Traceability Focused Grammar of Clinical Data Summary

A traceability focused tool created to simplify the data manipulation necessary to create clinical summaries.

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pharmatables

9.56 score 109 stars 161 scripts 589 downloads

pharmaRTF - Enhanced RTF Wrapper for Use with Existing Table Packages

Enhanced RTF wrapper written in R for use with existing R tables packages such as 'Huxtable' or 'GT'. This package fills a gap where tables in certain packages can be written out to RTF, but cannot add certain metadata or features to the document that are required/expected in a report for a regulatory submission, such as multiple levels of titles and footnotes, making the document landscape, and controlling properties such as margins.

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7.28 score 34 stars 139 scripts 416 downloads

tplyr2 - A Grammar of Clinical Summary Tables

Implements a grammar of summary data for clinical reports. Clinical summary tables are decomposed into modular layers, each representing an independent summary block. Supports count, descriptive statistics, and shift layer types with a declarative spec-based API built on data.table for performance.

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7.18 score 5 stars 61 scripts 56 downloads

datasetjson - Read and Write CDISC Dataset JSON Files

Read, construct and write CDISC (Clinical Data Interchange Standards Consortium) Dataset JSON (JavaScript Object Notation) files, while validating per the Dataset JSON schema file, as described in CDISC (2023) <https://www.cdisc.org/standards/data-exchange/dataset-json>.

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cdiscdataset-jsonzlib

6.91 score 26 stars 62 scripts 441 downloads

clinify - Clinical Table Styling Tools and Utilities

The primary motivation of this package is to take the things that are great about the R packages 'flextable' <https://davidgohel.github.io/flextable/> and 'officer' <https://davidgohel.github.io/officer/>, take the standard and complex pieces of formatting clinical tables for regulatory use, and simplify the tedious pieces.

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6.22 score 6 stars 31 scripts 295 downloads

abba - Batch Execution of R Programs on 'Kubernetes', 'SLURM', and 'Posit Workbench'

Submit and monitor batch execution of R programs across distributed computing backends including 'Kubernetes', 'SLURM', and 'Posit Workbench'. Provides end-user job submission functions, cluster interface functions using 'kubectl' and 'SLURM' commands, and a 'plumber' API template for secure identity segregation. Supports parallel and sequential batch execution, file-based caching to skip unchanged programs, and 'logrx' integration for execution logging.

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5.15 score 2 stars 8 scripts 251 downloads

egnyte - Read and Write Files from Egnyte

Provides functions to read and write files from Egnyte cloud storage using the Egnyte API. Supports both API key and OAuth 2.0 authentication for file transfer operations.

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4.60 score 1 stars 6 scripts 144 downloads