Pavlidis lab
The Pavlidis Lab at the University of British Columbia
- 17 followers
- Vancouver, British Columbia, Canada
- https://pavlab.msl.ubc.ca
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Repositories
Showing 10 of 73 repositories
- gemma-ui Public
Modernised React + TypeScript curation interface for the Gemma database. Drives the curation REST API and integrates agent-proposed designs / tags.
- gemma-curation-benchmark-data Public
Human-curated gold-standard Gemma curation (factors + tags) for benchmarking automated curation. Dev set = 400; test100 to follow. CC BY-NC 4.0.
- gemma-curation-agents-v1.1 Public
Gemma curation agents — v1.1 frozen public-release snapshot (paper-pinned). Agentic pipeline proposing/auditing Gemma curation for curator review.
- sc-annotation-pipeline Public
- rnaseq-pipeline Public
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
- gemmapy Public
- rdp Public
Researcher Gene Registry. Originally developed for the Canadian Rare Disease Models & Mechanisms Network
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