Package: ExploreModelMatrix 1.23.0

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Charlotte Soneson

ExploreModelMatrix: Graphical Exploration of Design Matrices

Given a sample data table and a design formula, ExploreModelMatrix generates an interactive application for exploration of the resulting design matrix. This can be helpful for interpreting model coefficients and constructing appropriate contrasts in (generalized) linear models. Static visualizations can also be generated.

Authors:Charlotte Soneson [aut, cre], Federico Marini [aut], Michael Love [aut], Florian Geier [aut], Michael Stadler [aut]

ExploreModelMatrix_1.23.0.tar.gz
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ExploreModelMatrix_1.23.0.tgz(r-4.5-any)
ExploreModelMatrix_1.23.0.tar.gz(r-4.6-any)ExploreModelMatrix_1.23.0.tar.gz(r-4.5-any)
ExploreModelMatrix_1.23.0.tgz(r-4.5-emscripten)
ExploreModelMatrix.pdf |ExploreModelMatrix.html
ExploreModelMatrix/json (API)
NEWS

# Install 'ExploreModelMatrix' in R:
install.packages('ExploreModelMatrix', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/csoneson/exploremodelmatrix/issues

On BioConductor:ExploreModelMatrix-1.23.0(bioc 3.23)ExploreModelMatrix-1.22.0(bioc 3.22)

experimentaldesignregressiondifferentialexpressionshinyapps

8.27 score 38 stars 101 scripts 534 downloads 2 mentions 2 exports 72 dependencies

Last updated from:e5a29c3874. Checks:1 WARNING, 9 OK. Indexed: yes.

TargetResultTotal timeArtifact
bioc-checksWARNING221
linux-devel-x86_64OK172
source / vignettesOK272
linux-release-x86_64OK229
macos-release-arm64OK162
macos-oldrel-arm64OK104
windows-develOK127
windows-releaseOK130
windows-oldrelOK135
wasm-releaseOK204

Exports:ExploreModelMatrixVisualizeDesign

Dependencies:base64encBiocGenericsbslibcachemclicommonmarkcowplotcpp11crosstalkdigestdplyrDTevaluatefarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteknitrlabelinglaterlazyevallifecyclelimmamagrittrMASSmemoisemimeotelpillarpkgconfigpromisespurrrR6rappdirsRColorBrewerRcpprintrojsrlangrmarkdownS4VectorsS7sassscalesshinyshinydashboardshinyjssourcetoolsstatmodstringistringrtibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyaml

Interactive exploration of design matrices with ExploreModelMatrix

Rendered fromExploreModelMatrix.Rmdusingknitr::rmarkdownon Dec 08 2025.

Last update: 2024-03-02
Started: 2020-03-27

Deploying ExploreModelMatrix on a Shiny Server

Rendered fromEMMdeploy.Rmdusingknitr::rmarkdownon Dec 08 2025.

Last update: 2020-06-14
Started: 2020-04-19

Readme and manuals

Help Manual

Help pageTopics
Explore model matrixExploreModelMatrix
Visualize design matrixVisualizeDesign

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