Package: MsBackendRawFileReader 1.17.0

Christian Panse

MsBackendRawFileReader: Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files

implements a MsBackend for the Spectra package using Thermo Fisher Scientific's NewRawFileReader .Net libraries. The package is generalizing the functionality introduced by the rawrr package Methods defined in this package are supposed to extend the Spectra Bioconductor package.

Authors:Christian Panse [aut, cre], Tobias Kockmann [aut], Roger Gine Bertomeu [ctb]

MsBackendRawFileReader_1.17.0.tar.gz
MsBackendRawFileReader_1.17.0.zip(r-4.6)MsBackendRawFileReader_1.17.0.zip(r-4.5)MsBackendRawFileReader_1.17.0.zip(r-4.4)
MsBackendRawFileReader_1.17.0.tgz(r-4.5-any)
MsBackendRawFileReader_1.17.0.tar.gz(r-4.6-any)MsBackendRawFileReader_1.17.0.tar.gz(r-4.5-any)
MsBackendRawFileReader_1.17.0.tgz(r-4.5-emscripten)
MsBackendRawFileReader.pdf |MsBackendRawFileReader.html✨
MsBackendRawFileReader/json (API)
NEWS

# Install 'MsBackendRawFileReader' in R:

install.packages('MsBackendRawFileReader', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fgcz/msbackendrawfilereader/issues

On BioConductor:MsBackendRawFileReader-1.17.0(bioc 3.23)MsBackendRawFileReader-1.16.0(bioc 3.22)

massspectrometry proteomics metabolomics

5.65 score 6 stars 5 scripts 320 downloads 8 exports 23 dependencies

Last updated from:c509d569f2. Checks:1 WARNING, 7 ERROR, 2 OK. Indexed: yes.

Target	Result	Total time
bioc-checks	WARNING	170
linux-devel-x86_64	ERROR	194
source / vignettes	OK	315
linux-release-x86_64	ERROR	194
macos-release-arm64	ERROR	163
macos-oldrel-arm64	ERROR	163
windows-devel	ERROR	157
windows-release	ERROR	158
windows-oldrel	ERROR	165
wasm-release	OK	150

Exports:extractByIndex filterScan intensity ioBenchmark MsBackendRawFileReader mz scanIndex scanType

Dependencies:BH BiocGenerics BiocParallel clue cluster codetools cpp11 formatR fs futile.logger futile.options generics IRanges lambda.r MASS MetaboCoreUtils MsCoreUtils ProtGenerics rawrr Rcpp S4Vectors snow Spectra

On Using and Extending the MsBackendRawFileReader Backend

Tobias Kockmann, Christian Panse

Rendered fromMsBackendRawFileReader.Rmdusingknitr::rmarkdownon Nov 23 2025.

Last update: 2024-11-07
Started: 2019-06-22

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
RawFileReader_read_peaks benchmark	ioBenchmark
MsBackendRawFileReader	filterScan,MsBackendRawFileReader-method MsBackendRawFileReader scanIndex,MsBackendRawFileReader-method scanType,MsBackendRawFileReader-method
RawFileReader-based backend	MsBackendRawFileReader-class