Package: diffcoexp 1.31.0

Wenbin Wei

diffcoexp: Differential Co-expression Analysis

A tool for the identification of differentially coexpressed links (DCLs) and differentially coexpressed genes (DCGs). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance.

Authors:Wenbin Wei, Sandeep Amberkar, Winston Hide

diffcoexp_1.31.0.tar.gz
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diffcoexp_1.31.0.tgz(r-4.5-any)
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diffcoexp_1.31.0.tgz(r-4.5-emscripten)
diffcoexp.pdf |diffcoexp.html✨
diffcoexp/json (API)
NEWS

# Install 'diffcoexp' in R:

install.packages('diffcoexp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hidelab/diffcoexp/issues

Datasets:

exprs.1 - Exprs.1
exprs.2 - Exprs.2

On BioConductor:diffcoexp-1.31.0(bioc 3.23)diffcoexp-1.30.0(bioc 3.22)

geneexpression differentialexpression transcription microarray onechannel twochannel rnaseq sequencing coverage immunooncology

6.87 score 16 stars 33 scripts 372 downloads 2 mentions 3 exports 111 dependencies

Last updated from:8943d77355. Checks:1 ERROR, 9 OK. Indexed: yes.

Target	Result	Total time
bioc-checks	ERROR	233
linux-devel-x86_64	OK	314
source / vignettes	OK	337
linux-release-x86_64	OK	349
macos-release-arm64	OK	238
macos-oldrel-arm64	OK	268
windows-devel	OK	276
windows-release	OK	253
windows-oldrel	OK	263
wasm-release	OK	212

Exports:coexpr comparecor diffcoexp

Dependencies:abind AnnotationDbi askpass backports base64enc Biobase BiocGenerics Biostrings bit bit64 blob bslib cachem checkmate cli cluster codetools colorspace cpp11 crayon curl data.table DBI DelayedArray DiffCorr digest doParallel dynamicTreeCut evaluate farver fastcluster fastmap fdrtool fontawesome foreach foreign Formula fs generics GenomicRanges ggplot2 glue GO.db GPArotation gridExtra gtable highr Hmisc htmlTable htmltools htmlwidgets httr igraph impute IRanges isoband iterators jquerylib jsonlite KEGGREST knitr labeling lattice lifecycle magrittr MASS Matrix MatrixGenerics matrixStats memoise mime mnormt multtest nlme nnet openssl pcaMethods pkgconfig plogr png preprocessCore psych R6 rappdirs RColorBrewer Rcpp rlang rmarkdown rpart RSQLite rstudioapi S4Arrays S4Vectors S7 sass scales Seqinfo SparseArray stringi stringr SummarizedExperiment survival sys tinytex vctrs viridisLite WGCNA withr xfun XVector yaml

About diffcoexp

Rendered fromdiffcoexp.Rnwusingutils::Sweaveon Nov 23 2025.

Last update: 2020-11-23
Started: 2018-01-17

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Identification of gene pairs coexpressed in at least one of two conditions	coexpr
Compare gene-gene correlation coefficients under two conditions	comparecor
Differential co-expression analysis	diffcoexp
exprs.1	exprs.1
exprs.2	exprs.2