Package: inTextSummaryTable 3.3.5

Laure Cougnaud

inTextSummaryTable: Creation of in-Text Summary Table

Creation of tables of summary statistics or counts for clinical data (for 'TLFs'). These tables can be exported as in-text table (with the 'flextable' package) for a Clinical Study Report (Word format) or a 'topline' presentation (PowerPoint format), or as interactive table (with the 'DT' package) to an html document for clinical data review.

Authors:Laure Cougnaud [aut, cre], Michela Pasetto [aut], Margaux Faes [rev], Open Analytics [cph]

inTextSummaryTable_3.3.5.tar.gz
inTextSummaryTable_3.3.5.zip(r-4.6)inTextSummaryTable_3.3.5.zip(r-4.5)inTextSummaryTable_3.3.5.zip(r-4.4)
inTextSummaryTable_3.3.5.tgz(r-4.5-any)
inTextSummaryTable_3.3.5.tar.gz(r-4.6-any)inTextSummaryTable_3.3.5.tar.gz(r-4.5-any)
inTextSummaryTable_3.3.5.tgz(r-4.5-emscripten)
inTextSummaryTable.pdf |inTextSummaryTable.html✨
inTextSummaryTable/json (API)
NEWS

# Install 'inTextSummaryTable' in R:

install.packages('inTextSummaryTable', repos = c('https://openanalytics.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/openanalytics/intextsummarytable/issues

On CRAN:

6.05 score 1 stars 53 scripts 356 downloads 32 exports 91 dependencies

Last updated from:ea79df8935. Checks:9 OK. Indexed: yes.

Target	Result	Total time	Artifact
linux-devel-x86_64	OK	201
source / vignettes	OK	281
linux-release-x86_64	OK	206
macos-release-arm64	OK	143
macos-oldrel-arm64	OK	219
windows-devel	OK	195
windows-release	OK	192
windows-oldrel	OK	183
wasm-release	OK	139

Exports:combine combineVariables computeSummaryStatistics computeSummaryStatisticsTable convertVectToBinary createFlextableWithHeader cv export exportFlextableToDocx exportSummaryStatisticsTable formatPercentage geomCV geomMean geomSD geomSE getColorPaletteTable getDimPage getListing getMaxNDecimals getMaxNDecimalsData getNDecimals getNDecimalsData getNDecimalsRule getStats getStatsData getSummaryStatisticsTable pageDimPresentation se subjectProfileSummaryPlot subjectProfileSummaryTable tableColorsPresentation tableColorsReport

Dependencies:askpass base64enc bit bit64 bslib cachem cli clinUtils clipr cowplot cpp11 crayon crosstalk data.table digest dplyr DT evaluate farver fastmap flextable fontawesome fontBitstreamVera fontLiberation fontquiver forcats fs gdtools generics ggplot2 ggrepel glue gtable haven highr hms htmltools htmlwidgets isoband jquerylib jsonlite knitr labeling later lazyeval lifecycle magrittr memoise mime officer openssl otel pillar pkgconfig plyr prettyunits progress promises purrr R6 ragg rappdirs RColorBrewer Rcpp readr reshape2 rlang rmarkdown S7 sass scales stringi stringr sys systemfonts textshaping tibble tidyr tidyselect tinytex tzdb utf8 uuid vctrs viridisLite vroom withr xfun xml2 yaml zip

Advanced user in-text tables

Laure Cougnaud

Rendered frominTextSummaryTable-advanced.Rmdusingknitr::rmarkdownon Dec 04 2025.

Last update: 2025-09-24
Started: 2022-02-01

Aesthetics

Michela Pasetto and Laure Cougnaud

Rendered frominTextSummaryTable-aesthetics.Rmdusingknitr::rmarkdownon Dec 04 2025.

Last update: 2025-09-24
Started: 2022-02-01

Creation of in-text tables

Laure Cougnaud

Rendered frominTextSummaryTable-createTables.Rmdusingknitr::rmarkdownon Dec 04 2025.

Last update: 2025-09-24
Started: 2022-02-01

Creation of standard in-text tables with the inTextSummaryTable package

Laure Cougnaud

Rendered frominTextSummaryTable-standardTables.Rmdusingknitr::rmarkdownon Dec 04 2025.

Last update: 2025-09-24
Started: 2022-02-01

Exporting in-text tables

Laure Cougnaud

Rendered frominTextSummaryTable-exportTables.Rmdusingknitr::rmarkdownon Dec 04 2025.

Last update: 2025-09-24
Started: 2022-02-01

Introduction to the inTextSummaryTable package

Laure Cougnaud

Rendered frominTextSummaryTable-introduction.Rmdusingknitr::rmarkdownon Dec 04 2025.

Last update: 2025-09-24
Started: 2022-02-01

Visualization functionalities

Laure Cougnaud

Rendered frominTextSummaryTable-visualization.Rmdusingknitr::rmarkdownon Dec 04 2025.

Last update: 2025-09-24
Started: 2022-02-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Check if variable(s) are present in reference: either in columns in a dataset or in reference set.	checkVar
Check the 'varLabInclude' variable.	checkVarLabInclude
Combine objects	combine
Combine summary statistics table	combine.summaryTable
Combine the column total for a combined summary table	combineColTotal
Create a data.frame combining a set of records from same or multiple variables.	combineVariables
Compute summary statistics of interest of an unique variable of interest.	computeSummaryStatistics
Compute summary statistics for a specific dataset and variables of interest	computeSummaryStatisticsTable
Convert summary statistics table to flextable	convertSummaryStatisticsTableToFlextable
Convert flag variable to a format such as only the flagged records are counted in the summary table.	convertVarFlag
Convert 'rowVar', 'colVar' and character 'var' in 'data' to factor	convertVarRowVarColVarToFactor
Convert vector to a bincode of 0/1 based on consecutive values in the vector.	convertVectToBinary
Create a flextable, setting the column names to syntactic names if it is not the case.	createFlextableWithHeader
Compute the percentage coefficient of variation, (in a scale from 0 to 100).	cv
Export an object	export
Export a summary table to 'docx', 'pptx' or 'html' format (interactive table)	export.summaryTable exportSummaryStatisticsTable
Export flextable to docx file	exportFlextableToDocx
Export summary table to an interactive DT table, e.g. to be exported into an html document.	exportSummaryStatisticsTableToDT
Export summary table to a flextable object, e.g. to be exported in Word or PowerPoint.	exportSummaryStatisticsTableToFlextable
Format a percentage.	formatPercentage
Format summary statistics table for export	formatSummaryStatisticsTable
Merge nested rows of a summary table for a format compatible with 'flextable'	formatSummaryStatisticsTableFlextable
Compute geometric coefficient of variation (in a scale from 0 to 100).	geomCV
Compute geometric mean.	geomMean
Compute geometric standard deviation	geomSD
Compute geometric standard error of the mean.	geomSE
Get color palette for the tables	getColorPaletteTable
Get dimension of the page available for content for standard Word report or PowerPoint presentation.	getDimPage
Format or create flextable for listings.	getListing
Get maximum number of decimals in a variable, based on pre-defined rule and/or data.	getMaxNDecimals
Get maximum number of decimals in a variable based on the data ('getNDecimalsData')	getMaxNDecimalsData
Get number of decimals for a specific vector.	getNDecimals
Get number of decimals based on the data in a numeric vector. Note: NA is returned if the element is missing (NA).	getNDecimalsData
Get number of decimals based pre-defined rule(s).	getNDecimalsRule
Get position(s) (start, end) of a pattern in a string.	getPatternPosition
Get default set of statistics for one particular variable.	getStats
Get default set of statistics for variables of interest and specific dataset.	getStatsData
Get summary statistics table	getSummaryStatisticsTable
inTextSummaryTable: creation of in-text summary table	inTextSummaryTable-package inTextSummaryTable
Arguments used across the functions of the inTextSummaryTable package.	inTextSummaryTable-common-args
Common arguments for the functionalities of the inTextSummaryTable package for DT export.	inTextSummaryTable-DT-args
Common arguments for the functionalities of the inTextSummaryTable package for flextable export.	inTextSummaryTable-flextable-args
Statistics in the in-text table package.	inTextSummaryTable-stats
Common arguments for the for the statistics utility functions of the inTextSummaryTable package.	inTextSummaryTable-stats-utility
Page dimension for powerpoints	pageDimPresentation
Post-process the summary statistics table with variable flag.	postProcessVarFlag
Compute standard error of the mean.	se
Plot subject summary profile.	subjectProfileSummaryPlot
Plot a table with 'ggplot' of a text variable of interest.	subjectProfileSummaryTable
'summaryTable'	summaryTable
Colors for tables in a presentation style	tableColorsPresentation
Colors for tables in a report style	tableColorsReport
Get unique variables with meaningful order.	uniqueVarWithOrder
Custom function to write table to a text file	writeTable

Usage by other packages (reverse dependencies)