Paper: https://onlinelibrary.wiley.com/doi/full/10.1002/mrm.27913
Code: https://github.com/MPUmri/RRIFT
Note: MATLAB. Reproduces ALL figures

Make sure before running the notebook you download simResults.mat, simResultsTRes15-varKtRR.mat, simResultsTRes15-varVeRR.mat and simMap.mat from the OSF repository and place them inside ./RRIFT/data/. Also make sure you have Anaconda 3 installed on your system as well as MATLAB R2020b.

You can download MATLAB from here.

• conda create -n rrift_notebook python=3.6 (you can set rrift_notebook to whatever you want the name of your environment to be)
• conda activate rrift_notebook

• pip install matlab_kernel

To check if the kernel is properly installed use the command jupyter kernelspec list which should list both MATLAB and Python if installed correctly.

The MATLAB executable needs to be exposed to Jypiter. You need to go to the directory where MATLAB is installed and navigate inside extern/engines/python. For example, the path should look something like this on Windows: M:\MATLAB\extern\engines\python or on Linux: /usr/local/MATLAB/R2020b/extern/engines/python.

Once you've navigated to that location you need to install the Python engine with the command:

• python setup.py install

• conda install sos sos-pbs -c conda-forge
• conda install sos-notebook jupyterlab-sos sos-papermill -c conda-forge
• conda install sos-python sos-matlab -c conda-forge

• pip install plotly=4.14.3 numpy=1.19.5 scipy=1.6.0 statsmodels=0.12.1 pandas=1.2.0

• jupyter notebook