1
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2
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113
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Limma-voom sample weights and impact on DEG numbers
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0
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1
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84
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wgcna module preseravtion taking too long?
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0
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1
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178
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Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCPlus)
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0
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3
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145
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3
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177
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57
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News: Opportunity to host EuroBioC2026 Preconference workshops!
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9 days ago laurah ondari • 0
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Clarification on counting in Rsubread (featureCounts)
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12 days ago • updated 4 days ago Luca • 0
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1
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120
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NUPOP usage
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updated 15 days ago by 4.2k • written 15 days ago by • 0
1
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2
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279
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0
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2
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220
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BiocParallel (and DESeq2) - wrong args for environment subassignment
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updated 21 days ago by 43k • written 23 days ago by • 0
0
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1
reply
180
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PTM analysis in LIMPA
limpa
updated 22 days ago by 53k • written 23 days ago by • 0
1
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0
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183
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News: Upcoming Ensembl API and data access changes - new blog post available
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24 days ago Ensembl_Jorge ▴ 10
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2
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212
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problem reading bam files into nucleR
nucleR
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0
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0
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14
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Spam: Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
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Spam: Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
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Spam: Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
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Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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two questions about limma
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165
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Question about DESeq2 Design for Paired Treatment Study
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1
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159
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1
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140
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PFAM formats changed - is it still possible to use this with ISA?
IsoformSwitchAnalyzeR
updated 6 days ago by • 0 • written 4 weeks ago by • 0
0
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2
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215
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DECIPHER DesignProbes unable to design FISH-probes
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2
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4
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401
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Large logFC but somewhat high FDR
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1
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211
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Job: Bioinformatician at the Lausanne University Hospital
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5
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489
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upstream git branches of bioc-release
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2
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4
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How can I correctly use phyloseq with Docker?
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420
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Boolean Gate Combination for Any 2 Positive Events in flowWorkspace
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updated 5 weeks ago by ★ 4.0k • written 5 months ago by • 0
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1
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391
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Guidance Requested on GCN Network Analysis and Module Enrichment in R
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ORFik: spliced 5utr regions
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2
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BiocManager::install() doesn't work
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289
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Empty boxes in treemap plot rrvgo package
rrvgo
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CRISPRSeek Question: changing weight and gRNA.size causes error
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2
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Feedback needed on new user-friendly BED file tool
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274
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sigDF object in sesame
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389
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Create consensusMatrix for codon bases
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Memory error while running alignments
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11
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Using DESeq2 on single cell RNA Seq data of same cell type but different conditions that were pseudo bulked
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Finding duplicated entries in GRangesList
GenomicRanges
updated 5 weeks ago by ★ 4.0k • written 4 months ago by • 0
0
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2
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DESeq2 on non-RNASeq counts data
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2
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After running samtools, the featureCounts command crashed.
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531
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Problem with the TMB plot
Bioconductor
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0
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1
reply
304
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mzR-Rcpp compiler version issue
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Comment: nice 3D displays for PCA analysis by adam80haynes • 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital by TikTsokaasocissalpc • 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Comment: DECIPHER DesignProbes unable to design FISH-probes by TikTsokaasocissalpc • 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers by Gordon Smyth 53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Answer: wgcna module preseravtion taking too long? by ATpoint ★ 5.0k
WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…
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Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
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