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baker-laboratory

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  1. RoseTTAFold-All-Atom RoseTTAFold-All-Atom Public

    Python 780 140

  2. rf_diffusion_all_atom rf_diffusion_all_atom Public

    Public RFDiffusionAA repo

    Python 462 87

  3. PLACER PLACER Public

    PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.

    Python 222 32

  4. CA_RFDiffusion CA_RFDiffusion Public

    Python 76 14

  5. NA-MPNN NA-MPNN Public

    Python 57 13

  6. Metallohydrolase_Enzyme_Design Metallohydrolase_Enzyme_Design Public

    Official GitHub repository for the manuscript entitled "Computational Design of Metallohydrolases" by Kim, Woodbury, & Ahern et al. published in Nature. This notebook contains (1) tutorials on how …

    Jupyter Notebook 19 3

Repositories

Showing 9 of 9 repositories
  • Metallohydrolase_Enzyme_Design Public

    Official GitHub repository for the manuscript entitled "Computational Design of Metallohydrolases" by Kim, Woodbury, & Ahern et al. published in Nature. This notebook contains (1) tutorials on how to use RFdiffusion2 for enzyme design, (2) a demo pipeline for metallohydrolase design, and (3) data, sequences, and design models from the manuscript.

    baker-laboratory/Metallohydrolase_Enzyme_Design’s past year of commit activity
    Jupyter Notebook 19 MIT 3 1 0 Updated Dec 4, 2025
  • NA-MPNN Public
    baker-laboratory/NA-MPNN’s past year of commit activity
    Python 57 13 1 0 Updated Nov 7, 2025
  • PLACER Public

    PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.

    baker-laboratory/PLACER’s past year of commit activity
    Python 222 32 7 1 Updated Nov 5, 2025
  • CA_RFDiffusion Public
    baker-laboratory/CA_RFDiffusion’s past year of commit activity
    Python 76 MIT 14 9 0 Updated Jun 4, 2025
  • RoseTTAFold-All-Atom Public
    baker-laboratory/RoseTTAFold-All-Atom’s past year of commit activity
    Python 780 140 107 (1 issue needs help) 6 Updated May 27, 2025
  • ipd Public

    Various base libraries for code at the IPD

    baker-laboratory/ipd’s past year of commit activity
    C++ 5 Apache-2.0 1 1 2 Updated May 2, 2025
  • mlb Public
    baker-laboratory/mlb’s past year of commit activity
    Python 0 0 0 0 Updated Mar 7, 2025
  • ppp Public

    Prettier Protein Project

    baker-laboratory/ppp’s past year of commit activity
    Python 1 Apache-2.0 0 0 1 Updated Nov 13, 2024
  • rf_diffusion_all_atom Public

    Public RFDiffusionAA repo

    baker-laboratory/rf_diffusion_all_atom’s past year of commit activity
    Python 462 87 23 2 Updated Jul 9, 2024

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