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| 1 | +# -------------------------------------------- |
| 2 | +# CITATION file created with {cffr} R package |
| 3 | +# See also: https://docs.ropensci.org/cffr/ |
| 4 | +# -------------------------------------------- |
| 5 | + |
| 6 | +cff-version: 1.2.0 |
| 7 | +message: 'To cite package "mauricer" in publications use:' |
| 8 | +type: software |
| 9 | +license: GPL-3.0-only |
| 10 | +title: 'mauricer: Work with ''BEAST2'' Packages' |
| 11 | +version: 2.5.5 |
| 12 | +doi: 10.1111/2041-210X.13032 |
| 13 | +identifiers: |
| 14 | +- type: doi |
| 15 | + value: 10.32614/CRAN.package.mauricer |
| 16 | +abstract: '''BEAST2'' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic |
| 17 | + tool, that uses DNA/RNA/protein data and many model priors to create a posterior |
| 18 | + of jointly estimated phylogenies and parameters. ''BEAST2'' is commonly accompanied |
| 19 | + by ''BEAUti 2'' (<https://www.beast2.org>), which, among others, allows one to install |
| 20 | + ''BEAST2'' package. This package allows to work with ''BEAST2'' packages from ''R''.' |
| 21 | +authors: |
| 22 | +- family-names: Bilderbeek |
| 23 | + given-names: Richèl J.C. |
| 24 | + |
| 25 | + orcid: https://orcid.org/0000-0003-1107-7049 |
| 26 | +preferred-citation: |
| 27 | + type: article |
| 28 | + title: 'babette: BEAUti 2, BEAST 2 and Tracer for R' |
| 29 | + authors: |
| 30 | + - family-names: Bilderbeek |
| 31 | + given-names: Richèl JC |
| 32 | + - family-names: Etienne |
| 33 | + given-names: Rampal S |
| 34 | + journal: Methods in Ecology and Evolution |
| 35 | + year: '2018' |
| 36 | + doi: 10.1111/2041-210X.13032 |
| 37 | +repository: https://CRAN.R-project.org/package=mauricer |
| 38 | +repository-code: https://github.com/ropensci/mauricer |
| 39 | +url: https://docs.ropensci.org/mauricer/ |
| 40 | +contact: |
| 41 | +- family-names: Bilderbeek |
| 42 | + given-names: Richèl J.C. |
| 43 | + |
| 44 | + orcid: https://orcid.org/0000-0003-1107-7049 |
| 45 | +keywords: |
| 46 | +- r |
| 47 | +- r-package |
| 48 | +- rstats |
| 49 | +references: |
| 50 | +- type: software |
| 51 | + title: stringr |
| 52 | + abstract: 'stringr: Simple, Consistent Wrappers for Common String Operations' |
| 53 | + notes: Imports |
| 54 | + url: https://stringr.tidyverse.org |
| 55 | + repository: https://CRAN.R-project.org/package=stringr |
| 56 | + authors: |
| 57 | + - family-names: Wickham |
| 58 | + given-names: Hadley |
| 59 | + |
| 60 | + year: '2025' |
| 61 | + doi: 10.32614/CRAN.package.stringr |
| 62 | +- type: software |
| 63 | + title: beastier |
| 64 | + abstract: 'beastier: Call ''BEAST2''' |
| 65 | + notes: Imports |
| 66 | + url: https://docs.ropensci.org/beastier/ |
| 67 | + repository: https://CRAN.R-project.org/package=beastier |
| 68 | + authors: |
| 69 | + - family-names: Bilderbeek |
| 70 | + given-names: Richèl J.C. |
| 71 | + |
| 72 | + orcid: https://orcid.org/0000-0003-1107-7049 |
| 73 | + identifiers: |
| 74 | + - type: url |
| 75 | + value: https://github.com/ropensci/beastier/ |
| 76 | + doi: 10.32614/CRAN.package.beastier |
| 77 | + version: '>= 2.5' |
| 78 | + year: '2025' |
| 79 | +- type: software |
| 80 | + title: beautier |
| 81 | + abstract: 'beautier: ''BEAUti'' from R' |
| 82 | + notes: Suggests |
| 83 | + url: https://docs.ropensci.org/beautier/ |
| 84 | + repository: https://CRAN.R-project.org/package=beautier |
| 85 | + authors: |
| 86 | + - family-names: Bilderbeek |
| 87 | + given-names: Richèl J.C. |
| 88 | + |
| 89 | + orcid: https://orcid.org/0000-0003-1107-7049 |
| 90 | + doi: 10.32614/CRAN.package.beautier |
| 91 | + version: '>= 2.6.11' |
| 92 | + year: '2025' |
| 93 | +- type: software |
| 94 | + title: curl |
| 95 | + abstract: 'curl: A Modern and Flexible Web Client for R' |
| 96 | + notes: Suggests |
| 97 | + url: https://jeroen.r-universe.dev/curl |
| 98 | + repository: https://CRAN.R-project.org/package=curl |
| 99 | + authors: |
| 100 | + - family-names: Ooms |
| 101 | + given-names: Jeroen |
| 102 | + |
| 103 | + orcid: https://orcid.org/0000-0002-4035-0289 |
| 104 | + year: '2025' |
| 105 | + doi: 10.32614/CRAN.package.curl |
| 106 | +- type: software |
| 107 | + title: knitr |
| 108 | + abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R' |
| 109 | + notes: Suggests |
| 110 | + url: https://yihui.org/knitr/ |
| 111 | + repository: https://CRAN.R-project.org/package=knitr |
| 112 | + authors: |
| 113 | + - family-names: Xie |
| 114 | + given-names: Yihui |
| 115 | + |
| 116 | + orcid: https://orcid.org/0000-0003-0645-5666 |
| 117 | + year: '2025' |
| 118 | + doi: 10.32614/CRAN.package.knitr |
| 119 | +- type: software |
| 120 | + title: rmarkdown |
| 121 | + abstract: 'rmarkdown: Dynamic Documents for R' |
| 122 | + notes: Suggests |
| 123 | + url: https://pkgs.rstudio.com/rmarkdown/ |
| 124 | + repository: https://CRAN.R-project.org/package=rmarkdown |
| 125 | + authors: |
| 126 | + - family-names: Allaire |
| 127 | + given-names: JJ |
| 128 | + |
| 129 | + - family-names: Xie |
| 130 | + given-names: Yihui |
| 131 | + |
| 132 | + orcid: https://orcid.org/0000-0003-0645-5666 |
| 133 | + - family-names: Dervieux |
| 134 | + given-names: Christophe |
| 135 | + |
| 136 | + orcid: https://orcid.org/0000-0003-4474-2498 |
| 137 | + - family-names: McPherson |
| 138 | + given-names: Jonathan |
| 139 | + |
| 140 | + - family-names: Luraschi |
| 141 | + given-names: Javier |
| 142 | + - family-names: Ushey |
| 143 | + given-names: Kevin |
| 144 | + |
| 145 | + - family-names: Atkins |
| 146 | + given-names: Aron |
| 147 | + |
| 148 | + - family-names: Wickham |
| 149 | + given-names: Hadley |
| 150 | + |
| 151 | + - family-names: Cheng |
| 152 | + given-names: Joe |
| 153 | + |
| 154 | + - family-names: Chang |
| 155 | + given-names: Winston |
| 156 | + |
| 157 | + - family-names: Iannone |
| 158 | + given-names: Richard |
| 159 | + |
| 160 | + orcid: https://orcid.org/0000-0003-3925-190X |
| 161 | + year: '2025' |
| 162 | + doi: 10.32614/CRAN.package.rmarkdown |
| 163 | +- type: software |
| 164 | + title: testthat |
| 165 | + abstract: 'testthat: Unit Testing for R' |
| 166 | + notes: Suggests |
| 167 | + url: https://testthat.r-lib.org |
| 168 | + repository: https://CRAN.R-project.org/package=testthat |
| 169 | + authors: |
| 170 | + - family-names: Wickham |
| 171 | + given-names: Hadley |
| 172 | + |
| 173 | + year: '2025' |
| 174 | + doi: 10.32614/CRAN.package.testthat |
| 175 | + version: '>= 2.1.0' |
| 176 | +- type: software |
| 177 | + title: tracerer |
| 178 | + abstract: 'tracerer: Tracer from R' |
| 179 | + notes: Suggests |
| 180 | + url: https://docs.ropensci.org/tracerer/ |
| 181 | + repository: https://CRAN.R-project.org/package=tracerer |
| 182 | + authors: |
| 183 | + - family-names: Bilderbeek |
| 184 | + given-names: Richèl J.C. |
| 185 | + |
| 186 | + orcid: https://orcid.org/0000-0003-1107-7049 |
| 187 | + year: '2025' |
| 188 | + doi: 10.32614/CRAN.package.tracerer |
| 189 | + |
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