Bioconductor Ebarrays

Showing : ebarrays • reset

votes

replies

1.3k

views

EBarrays EBarrays

14.7 years ago [email protected] ▴ 30

votes

replies

1.1k

views

EBarrays EBarrays

updated 17.5 years ago by Sean Davis 21k • written 17.5 years ago by affy snp ▴ 640

votes

replies

1.7k

views

Microarray GO affy limma EBarrays Microarray GO affy limma EBarrays

updated 20.6 years ago by Marcus ▴ 150 • written 20.6 years ago by Marcus Davy ▴ 680

votes

replies

1.9k

views

Microarray Ruuid graph limma EBarrays Microarray Ruuid graph limma EBarrays

21.8 years ago • updated 21.7 years ago [email protected] ▴ 850

votes

replies

1.8k

views

EBarrays EBarrays

updated 21.7 years ago by Marcus Davy ▴ 680 • written 21.7 years ago by [email protected] ▴ 620

votes

replies

1.3k

views

Microarray EBarrays Microarray EBarrays

21.8 years ago Jeff Gentry ★ 3.9k

6 results • Page 1 of 1

Recent ...

Replies

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Commentator to sina.nassiri ▴ 130