Bioconductor Genesis

Showing : genesis • reset

votes

replies

410

views

GENESIS

18 months ago SuperDad • 0

votes

775

views

GENESIS

22 months ago Stephanie M. Gogarten ▴ 890

votes

replies

1.2k

views

GENESIS GWASTools GDSfile

updated 2.0 years ago by Stephanie M. Gogarten ▴ 890 • written 2.0 years ago by Mindy wang • 0

votes

replies

932

views

GENESIS SeqVarTools

updated 2.1 years ago by Stephanie M. Gogarten ▴ 890 • written 2.1 years ago by pjuge • 0

vote

1.2k

views

GENESIS autosome-only=FALSE? PCAir

updated 2.1 years ago by James W. MacDonald 68k • written 2.1 years ago by gabry.scata ▴ 10

votes

replies

715

views

GENESIS admixMap

2.1 years ago mailtoshivam13 • 0

votes

replies

1.5k

views

GENESIS

updated 2.4 years ago by Stephanie M. Gogarten ▴ 890 • written 2.5 years ago by SuperDad • 0

votes

710

views

assocTestSingle GENESIS

written 2.8 years ago by SuperD • 0

votes

replies

1.3k

views

kingToMatrix GENESIS Plants

3.1 years ago Monica • 0

vote

replies

5.5k

views

gwas genesis p-value q-q-plot

updated 4.8 years ago by Anna • 0 • written 6.0 years ago by solanum • 0

votes

1.3k

views

GENESIS

5.0 years ago Stephanie M. Gogarten ▴ 890

votes

replies

1.1k

views

GENESIS

5.1 years ago Stephanie M. Gogarten ▴ 890

votes

replies

2.2k

views

genesis effect allele association analysis

updated 5.3 years ago by Stephanie M. Gogarten ▴ 890 • written 5.3 years ago by ucbtapc • 0

votes

1.2k

views

genesis gwastools

5.4 years ago Stephanie M. Gogarten ▴ 890

votes

replies

1.4k

views

genesis

updated 5.4 years ago by Stephanie M. Gogarten ▴ 890 • written 5.4 years ago by o.giannakopoulou • 0

votes

1.8k

views

genesis gds SeqVarData

updated 5.5 years ago by Stephanie M. Gogarten ▴ 890 • written 5.5 years ago by JT • 0

votes

replies

2.4k

views

Genesis

5.8 years ago alipka ▴ 10

votes

1.1k

views

GENESIS

updated 5.9 years ago by Stephanie M. Gogarten ▴ 890 • written 5.9 years ago by lassana.a.samarakoon ▴ 10

votes

replies

1.2k

views

rna-seq tmixclust k-means clustering gene expression genesis

6.0 years ago astridite • 0

votes

1.2k

views

genesis

6.1 years ago Stephanie M. Gogarten ▴ 890

vote

replies

1.8k

views

GENESIS

6.1 years ago Corey.Cox • 0

vote

1.4k

views

GENESIS zscore wald

updated 6.2 years ago by Stephanie M. Gogarten ▴ 890 • written 6.2 years ago by lassana.a.samarakoon ▴ 10

votes

replies

2.2k

views

genesis output score

updated 6.2 years ago by Stephanie M. Gogarten ▴ 890 • written 6.2 years ago by lassana.a.samarakoon ▴ 10

votes

replies

1.6k

views

genesis admixmap

updated 6.2 years ago by Stephanie M. Gogarten ▴ 890 • written 6.2 years ago by GENOMIC_region • 0

votes

replies

2.6k

views

Genesis Installation

updated 6.3 years ago by Mike Smith ★ 6.6k • written 6.3 years ago by winstondunnmd ▴ 10

votes

replies

1.7k

views

genesis fitnullmodel gwas ascertainment

updated 6.4 years ago by mconomos ▴ 70 • written 6.4 years ago by ferranpauls10 • 0

votes

replies

3.7k

views

genesis admixmap

updated 6.6 years ago by Stephanie M. Gogarten ▴ 890 • written 6.6 years ago by GENOMIC_region • 0

votes

1.3k

views

genesis

6.7 years ago Stephanie M. Gogarten ▴ 890

votes

replies

3.4k

views

genesis pcrelate gds

updated 6.8 years ago by Stephanie M. Gogarten ▴ 890 • written 6.8 years ago by o.giannakopoulou • 0

votes

replies

2.3k

views

genesis gwastools seqarray

7.2 years ago • updated 6.8 years ago Stephanie M. Gogarten ▴ 890

votes

1.4k

views

GENESIS GWAS resampling resample statistics

6.8 years ago naglemi ▴ 10

vote

1.4k

views

GENESIS GWAS AssocTestMM

updated 7.1 years ago by mconomos ▴ 70 • written 7.1 years ago by naglemi ▴ 10

vote

1.4k

views

genesis pcrrelate gds

updated 7.1 years ago by Stephanie M. Gogarten ▴ 890 • written 7.1 years ago by roll • 0

votes

1.3k

views

genesis snprelate

7.2 years ago Stephanie M. Gogarten ▴ 890

votes

1.5k

views

GENESIS GWAS GDS

updated 7.2 years ago by zhengx ▴ 30 • written 7.2 years ago by naglemi ▴ 10

votes

1.1k

views

genesis

7.3 years ago Stephanie M. Gogarten ▴ 890

votes

replies

1.7k

views

GENESIS assoctestmm GWAS

updated 7.4 years ago by mconomos ▴ 70 • written 7.4 years ago by naglemi ▴ 10

votes

replies

2.0k

views

LMM GWAS GENESIS assocTestMM

updated 7.4 years ago by mconomos ▴ 70 • written 7.4 years ago by naglemi ▴ 10

votes

replies

2.3k

views

genesis pcair

7.6 years ago GENOMIC_region • 0

votes

replies

2.6k

views

genesis

7.6 years ago Stephanie M. Gogarten ▴ 890

40 results • Page 1 of 1

Recent ...

Replies

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Commentator to sina.nassiri ▴ 130