Showing : heatmaps • reset
2
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5
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1.3k
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Heatmap of rnaseq data with z-score scale
heatmaps RNASeq
updated 6 months ago by ▴ 110 • written 6 months ago by ▴ 10
1
vote
5
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1.5k
views
Heatmap of a transformed deseq object with pheatmap
DESeq2 heatmaps
updated 6 months ago by 68k • written 6 months ago by ▴ 10
0
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2
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948
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DESeq2 Heatmap
heatmaps
updated 10 months ago by ★ 1.4k • written 10 months ago by • 0
0
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3
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1.7k
views
Label specific rows in pheatmap
heatmaps pheatmap
updated 13 months ago by 68k • written 13 months ago by ▴ 50
1
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5
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2.3k
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Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 15 months ago by • 0
2
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1
reply
1.6k
views
DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2 heatmaps
updated 16 months ago by ★ 5.0k • written 16 months ago by • 0
0
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0
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513
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Error in drawHeatmap function
GeneOverlap heatmaps
18 months ago Johanna • 0
0
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2
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1.3k
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Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 18 months ago by 68k • written 18 months ago by • 0
0
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1
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2.6k
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 2.1 years ago by ▴ 780 • written 2.1 years ago by • 0
0
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1
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2.7k
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edgeR heatmap construction and interpretation
heatmaps
updated 2.1 years ago by 53k • written 2.1 years ago by • 0
0
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3
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1.5k
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Installing Gpart
gpart heat heatmaps
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
0
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2
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1.3k
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Drawing a heatmap with only limited genes
heatmaps
updated 2.4 years ago by • 0 • written 2.5 years ago by • 0
1
vote
1
reply
954
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 2.7 years ago by ▴ 90 • written 2.7 years ago by ▴ 10
0
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1
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1.2k
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 2.7 years ago by ★ 5.0k • written 2.8 years ago by • 0
0
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2
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1.9k
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
2.8 years ago shuangshuang • 0
0
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0
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1.6k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.8 years ago gianni.drm • 0
0
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1
reply
1.3k
views
struggling to create a heatmap
DESeq2 heatmaps
updated 2.8 years ago by ★ 5.0k • written 2.8 years ago by ▴ 10
2
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3
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2.0k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 2.9 years ago by ▴ 40 • written 2.9 years ago by ▴ 10
2
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2
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1.2k
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
2.9 years ago Sooni ▴ 10
4
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5
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6.5k
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 2.8 years ago by 53k • written 2.9 years ago by ▴ 10
2
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5
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2.8k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
3.0 years ago Katharina • 0
0
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1
reply
4.3k
views
Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 3.1 years ago by 43k • written 3.2 years ago by • 0
0
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3
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2.3k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 3.2 years ago by 68k • written 3.2 years ago by • 0
0
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1
reply
2.5k
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Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 3.3 years ago by ▴ 290 • written 3.3 years ago by • 0
1
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1
reply
1.6k
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 3.4 years ago by 68k • written 3.4 years ago by • 0
0
votes
2
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8.4k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
3.5 years ago • updated 3.4 years ago Bhavana • 0
0
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3
replies
2.1k
views
Persisting error in making a heatmap
heatmaps gplots
3.5 years ago beslinail • 0
1
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1
reply
1.3k
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 3.6 years ago by 68k • written 3.6 years ago by • 0
0
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1
reply
1.7k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 4.3 years ago by ▴ 40 • written 4.3 years ago by • 0
0
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2
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2.4k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
4.5 years ago Clara ▴ 10
0
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1
reply
3.6k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by ▴ 10
1
vote
1
reply
1.4k
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 4.8 years ago by 43k • written 4.8 years ago by ▴ 30
4
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5
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2.1k
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DEseq2 results
heatmaps DEGs PCA
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by • 0
0
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0
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1.1k
views
How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 6.8 years ago by 68k • written 6.8 years ago by ▴ 10
34 results • Page 1 of 1
Recent ...
Replies
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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