@comment{It is strongly recommended to use BibLaTeX for these entries}

@inproceedings{:SWAT4HCLS2024,
title = {Preface},
url = {http://ceur-ws.org/Vol-3890/#preface},
crossref = {SWAT4HCLS2024},
}

@inproceedings{AlharbiEtAl:SWAT4HCLS2024,
title = {Exploring the role of generative {AI} in constructing knowledge graphs for drug indications with medical context},
author = {Reham Alharbi and Umair Ahmed and Daniil Dobriy and Weronika Łajewska and Laura Menotti and Mohammad Javad Saeedizade and Michel Dumontier},
pages = {1--10},
url = {http://ceur-ws.org/Vol-3890/#paper-1},
crossref = {SWAT4HCLS2024},
}

@inproceedings{UnniEtAl:SWAT4HCLS2024,
title = {{SPHN} strategy to unravel the semantic drift between versions of standard terminologies},
author = {Deepak Unni and Vasundra Touré and Philip Krauss and Katrin Crameri and Sabine Österle},
pages = {11--22},
url = {http://ceur-ws.org/Vol-3890/#paper-2},
crossref = {SWAT4HCLS2024},
}

@inproceedings{JheeEtAl:SWAT4HCLS2024,
title = {Representation and comparison of chemotherapy protocols with {ChemoKG} and graph embeddings},
author = {Jong Ho Jhee and Alice Rogier and Dune Giraud and Emma Pinet and Brigitte Sabatier and Bastien Rance and Adrien Coulet},
pages = {23--35},
url = {http://ceur-ws.org/Vol-3890/#paper-3},
crossref = {SWAT4HCLS2024},
}

@inproceedings{RangelEtAl:SWAT4HCLS2024,
title = {{SPARQL} generation: an analysis on fine-tuning {OpenLLaMA} for {Question} {Answering} over a {Life} {Science} {Knowledge} {Graph}},
author = {Julio C. Rangel and Tarcisio Mendes de Farias and Ana Claudia Sima and Norio Kobayashi},
pages = {36--45},
url = {http://ceur-ws.org/Vol-3890/#paper-4},
crossref = {SWAT4HCLS2024},
}

@inproceedings{LoeschEtAl:SWAT4HCLS2024,
title = {Explaining {Graph} {Neural} {Network} predictions for drug repurposing},
author = {Julie Loesch and Yang Yang and Pelinsu Ekmekci and Michel Dumontier and Remzi Celebi},
pages = {46--55},
url = {http://ceur-ws.org/Vol-3890/#paper-5},
crossref = {SWAT4HCLS2024},
}

@inproceedings{ErtenEtAl:SWAT4HCLS2024,
title = {Refining {SemOpenAlex} concept ontology: A constraint-aware approach via knowledge graph embeddings and {SKOS} constraints},
author = {Özge Erten and Shervin Mehryar and Bo Xiong and Remzi Çelebi and Christopher Brewster},
pages = {56--65},
url = {http://ceur-ws.org/Vol-3890/#paper-6},
crossref = {SWAT4HCLS2024},
}

@inproceedings{Fernández-ÁlvarezEtAl:SWAT4HCLS2024,
title = {Extracting shapes from large {RDF} data collections},
author = {Daniel Fernández-Álvarez and Yasunori Yamamoto and Jose Emilio Labra-Gayo and Andra Waagmeester},
pages = {66--75},
url = {http://ceur-ws.org/Vol-3890/#paper-7},
crossref = {SWAT4HCLS2024},
}

@inproceedings{BasetClement:SWAT4HCLS2024,
title = {Unlocking semantics as a {FAIR} implementation profile. Reflections and lessons learned building user-centric semantic authoring applications},
author = {Selena Baset and Didier Clement},
pages = {76--87},
url = {http://ceur-ws.org/Vol-3890/#paper-8},
crossref = {SWAT4HCLS2024},
}

@inproceedings{ReepEtAl:SWAT4HCLS2024,
title = {Automated drug repurposing workflow for rare diseases},
author = {Carmen A. T. Reep and Katherine Wolstencroft and Eleni Mina and Núria Queralt-Rosinach},
pages = {88--106},
url = {http://ceur-ws.org/Vol-3890/#paper-9},
crossref = {SWAT4HCLS2024},
}

@inproceedings{HorstEtAl:SWAT4HCLS2024,
title = {Bridging clinical and genomic knowledge: An extension of the {SPHN} {RDF} {Schema} for seamless integration and {FAIRification} of omics data},
author = {Eelke van der Horst and Deepak Unni and Femke C. Kopmels and Jan Armida and Vasundra Touré and Wouter Franke and Katrin Crameri and Elisa Cirillo and Sabine Österle},
pages = {107--115},
url = {http://ceur-ws.org/Vol-3890/#paper-10},
crossref = {SWAT4HCLS2024},
}

@inproceedings{Alarcón-MorenoWilkinson:SWAT4HCLS2024,
title = {Take {CARE} of your patient data. {Clinical} {And} {Registry} {Entries} ({CARE}) {Semantic} {Model}},
author = {Pablo Alarcón-Moreno and Mark Denis Wilkinson},
pages = {116--123},
url = {http://ceur-ws.org/Vol-3890/#paper-11},
crossref = {SWAT4HCLS2024},
}

@inproceedings{MichaelisEtAl:SWAT4HCLS2024,
title = {Applying the {RDA} {Data} {Maturity} {Model} on the {Core} {Dataset} of the {German} {Medical} {Informatics} {Initiative}},
author = {Lea Michaelis and Esther Thea Inau and Michael Rusongoza Muzoora and Judith A. H. Wodke and Thomas Ganslandt and Sylvia Thun and Dagmar Waltemath},
pages = {124--128},
url = {http://ceur-ws.org/Vol-3890/#paper-12},
crossref = {SWAT4HCLS2024},
}

@inproceedings{ReynaresEtAl:SWAT4HCLS2024,
title = {A metadata profile to promote {Real}-{World} {Data} discoverability},
author = {Emiliano Reynares and Andrea Splendiani and Hanne van Ballegooijen},
pages = {129--133},
url = {http://ceur-ws.org/Vol-3890/#paper-13},
crossref = {SWAT4HCLS2024},
}

@inproceedings{MohammadiDumontier:SWAT4HCLS2024,
title = {Analyzing {SPARQL} query logs: A study on schema coverage and query content},
author = {Maryam Mohammadi and Michel Dumontier},
pages = {134--139},
url = {http://ceur-ws.org/Vol-3890/#paper-14},
crossref = {SWAT4HCLS2024},
}

@inproceedings{LiaoEtAl:SWAT4HCLS2024,
title = {Ontology enhanced {FAIR} {Data} {Point} searches},
author = {Xiaofeng Liao and Coos Baakman and Kees Burger and Luiz Olavo Bonino da Silva Santos and Peter A. C. 't Hoen},
pages = {140--144},
url = {http://ceur-ws.org/Vol-3890/#paper-15},
crossref = {SWAT4HCLS2024},
}

@inproceedings{HooshafzaEtAl:SWAT4HCLS2024,
title = {Temporal data modeling evaluation in knowledge graphs: A healthcare use case},
author = {Sepideh Hooshafza and Gaye Stephens and Mark A. Little and Beyza Yaman},
pages = {145--146},
url = {http://ceur-ws.org/Vol-3890/#paper-16},
crossref = {SWAT4HCLS2024},
}

@inproceedings{TabanaoEtAl:SWAT4HCLS2024,
title = {Recognition of biodiversity-related named entities by fine-tuning general-domain {BERT}-based language models},
author = {Geilah T. Tabanao and Andrew Miguel V. Pagdanganan and Riza Batista-Navarro and Roselyn S. Gabud},
pages = {147--148},
url = {http://ceur-ws.org/Vol-3890/#paper-17},
crossref = {SWAT4HCLS2024},
}

@inproceedings{BurdetEtAl:SWAT4HCLS2024,
title = {Application of the {RDF} framework to integrate heterogenous experimental data of a large chemo- and biodiverse collection from a collaborative research project},
author = {Frederic Burdet and Luis-Manuel Quiros-Guerrero and Olivier Kirchhoffer and Jahn Nitschke and Pierre-Marie Allard and Louis-Felix Nothias and Arnaud Gaudry and Sébastien Moretti and Robin Engler and Emerson Ferreira Queiroz and Nabil Hanna and Chunyan Wu and Antonio Grondin and Bruno David and Thierry Soldati and Christian Wolfrum and Erick Carreira and Jean-Luc Wolfender and Marco Pagni and Florence Mehl},
pages = {149--152},
url = {http://ceur-ws.org/Vol-3890/#paper-18},
crossref = {SWAT4HCLS2024},
}

@inproceedings{AdamsEtAl:SWAT4HCLS2024,
title = {{INDEX}: the {Intelligent} {Data} {Steward} {Toolbox}. Utilizing {Large} {Language} {Model} embeddings for automated data harmonization},
author = {Tim Adams and Mohamed Aborageh and Yasamin Salimi and Holger Fröhlich and Marc Jacobs},
pages = {153--154},
url = {http://ceur-ws.org/Vol-3890/#paper-19},
crossref = {SWAT4HCLS2024},
}

@inproceedings{DoerrBorn:SWAT4HCLS2024,
title = {{LARA} - embracing almost fully automated experimentation from ground up by using semantic web technologies in {Life} {Sciences}},
author = {Mark Doerr and Stefan Born},
pages = {155--156},
url = {http://ceur-ws.org/Vol-3890/#paper-20},
crossref = {SWAT4HCLS2024},
}

@inproceedings{KakalouEtAl:SWAT4HCLS2024,
title = {Personalised medical content delivery to support patient empowerment based on knowledge graphs},
author = {Christine Kakalou and Christina Karamanidou and Theodore Dalamagas and Manolis Koubarakis},
pages = {157--158},
url = {http://ceur-ws.org/Vol-3890/#paper-21},
crossref = {SWAT4HCLS2024},
}

@inproceedings{BernasconiEtAl:SWAT4HCLS2024,
title = {Achieving data {FAIRification} in a distributed analytics research platform for rare diseases},
author = {Anna Bernasconi and Cinzia Cappiello and Stefano Ceri and Pietro Pinoli},
pages = {159--160},
url = {http://ceur-ws.org/Vol-3890/#paper-22},
crossref = {SWAT4HCLS2024},
}

@inproceedings{Abbassi-DaloiiEtAl:SWAT4HCLS2024,
title = {{BioDataFuse}: Enhancing data interoperability through modular queries and knowledge graph construction},
author = {Tooba Abbassi-Daloii and Yojana Gadiya and Ammar Ammar and Egon Willighagen and Ana Claudia Sima and Hasan Balci},
pages = {161--164},
url = {http://ceur-ws.org/Vol-3890/#paper-23},
crossref = {SWAT4HCLS2024},
}

@inproceedings{CelebiEtAl:SWAT4HCLS2024,
title = {Construction of a knowledge graph for food health claims},
author = {Remzi Celebi and Ilse van Lier and Alie de Boer and Michel Dumontier},
pages = {165--166},
url = {http://ceur-ws.org/Vol-3890/#paper-24},
crossref = {SWAT4HCLS2024},
}

@inproceedings{CrumEtAl:SWAT4HCLS2024,
title = {Personalized medicine through personal data pods},
author = {Elias Crum and Ruben Taelman and Bart Buelens and Gokhan Ertaylan and Ruben Verborgh},
pages = {167--168},
url = {http://ceur-ws.org/Vol-3890/#paper-25},
crossref = {SWAT4HCLS2024},
}

@inproceedings{RavinderEtAl:SWAT4HCLS2024,
title = {Designing a {FAIRification} game for {Research} {Software}},
author = {Rohitha Ravinder and Dhwani Solanki and Claudio Carta and Bruna dos Santos Vieira and Johannes Keller and Marco Roos and Leyla Jael Castro},
pages = {169--170},
url = {http://ceur-ws.org/Vol-3890/#paper-26},
crossref = {SWAT4HCLS2024},
}

@inproceedings{GanopoulouEtAl:SWAT4HCLS2024,
title = {Causal discovery on {Health}-related {Quality} {of} {Life} of cancer patients},
author = {Maria Ganopoulou and Efstratios Kontopoulos and Konstantinos Fokianos and Lefteris Angelis and Ioannis Kotsianidis and Theodoros Moysiadis},
pages = {171--172},
url = {http://ceur-ws.org/Vol-3890/#paper-27},
crossref = {SWAT4HCLS2024},
}

@inproceedings{BollemanEtAl:SWAT4HCLS2024,
title = {{CHIST}-{ERA} {Triple}: improving data interoperability and federation across {RDF} knowledge graphs and {Solid} {Pods}},
author = {Jerven Bolleman and Elias Crum and Iulian Dragan and Jakub Galgonek and Mark Ibberson and Tarcisio Mendes de Farias and Marek Moos and Marco Pagni and Ruben Taelman and Jiří Vondrášek and Ana Claudia Sima},
pages = {173--175},
url = {http://ceur-ws.org/Vol-3890/#paper-28},
crossref = {SWAT4HCLS2024},
}

@inproceedings{JensterEtAl:SWAT4HCLS2024,
title = {Updating the {SynthDNASim} tool to create diverse synthetic {DNA} datasets},
author = {Caitlin Jenster and Rick Overkleeft and Núria Queralt Rosinach},
pages = {176--177},
url = {http://ceur-ws.org/Vol-3890/#paper-29},
crossref = {SWAT4HCLS2024},
}

@inproceedings{WijnbergenEtAl:SWAT4HCLS2024,
title = {{FAIR} for automatic federated omics analysis},
author = {Daphne Wijnbergen and Georgios Malamas and Marco Roos and Eleni Mina},
pages = {178--179},
url = {http://ceur-ws.org/Vol-3890/#paper-30},
crossref = {SWAT4HCLS2024},
}

@inproceedings{Martinez-GonzalezEtAl:SWAT4HCLS2024,
title = {{DATOS}-{CAT}: Methodologies for the standardization, integration and analysis of population-based biomedical data using semantic technologies},
author = {Judith Martinez-Gonzalez and Guillem Bracons Cucó and Aikaterini Lymperidou and Xavier Escribà-Montagut and Marta Huertas and Ramon Mateo-Navarro and David Sarrat-González and Santiago Frid and Rafael de Cid and Juan Ramón González and Alberto Labarga},
pages = {180--182},
url = {http://ceur-ws.org/Vol-3890/#paper-31},
crossref = {SWAT4HCLS2024},
}

@inproceedings{ChytasEtAl:SWAT4HCLS2024,
title = {{OMOP}-{CDM} mapping to {RDF/OWL}: Attempting to bridge the {OHDSI} ecosystem and the {Semantic} {Web} world},
author = {Achilleas Chytas and Nick Bassiliades and Pantelis Natsiavas},
pages = {183--184},
url = {http://ceur-ws.org/Vol-3890/#paper-32},
crossref = {SWAT4HCLS2024},
}

@inproceedings{ChytasNatsiavas:SWAT4HCLS2024,
title = {{OpenPVSignal} {Knowledge} {Graph}: An openly available data source for pharmacovigilance signal reports},
author = {Achilleas Chytas and Pantelis Natsiavas},
pages = {185--186},
url = {http://ceur-ws.org/Vol-3890/#paper-33},
crossref = {SWAT4HCLS2024},
}

@inproceedings{BollemanEtAl:SWAT4HCLS2024,
title = {{FAIR} {Service} {Descriptions}: enriching life science {SPARQL} endpoints},
author = {Jerven Bolleman and Alan Bridge and Nicole Redaschi},
pages = {187--188},
url = {http://ceur-ws.org/Vol-3890/#paper-34},
crossref = {SWAT4HCLS2024},
}

@inproceedings{MetereauEtAl:SWAT4HCLS2024,
title = {Integration of variation data through {SPARQL} {Micro}-{Services}},
author = {Frederic Metereau and Franck Michel and Pierre Larmande and Guilhem Sempere and Catherine Faron},
pages = {189--190},
url = {http://ceur-ws.org/Vol-3890/#paper-35},
crossref = {SWAT4HCLS2024},
}

@inproceedings{AmmarWillighagen:SWAT4HCLS2024,
title = {Nanosafety data made interoperable using semantic modeling and linked-data knowledge graphs},
author = {Ammar Ammar and Egon Willighagen},
pages = {191--191},
url = {http://ceur-ws.org/Vol-3890/#paper-36},
crossref = {SWAT4HCLS2024},
}

@inproceedings{MarchmentEtAl:SWAT4HCLS2024,
title = {Representing bioinformatics {Nextflow} workflows in {RO}-{Crate}: challenges and opportunities},
author = {George Marchment and Marie Schmit and Clémence Sebe and Frédéric Lemoine and Hervé Ménager and Sarah Cohen-Boulakia},
pages = {192--193},
url = {http://ceur-ws.org/Vol-3890/#paper-37},
crossref = {SWAT4HCLS2024},
}

@inproceedings{SplendianiEtAl:SWAT4HCLS2024,
title = {The approach of {IQVIA} to ontologies for healthcare and life sciences},
author = {Andrea Splendiani and Emiliano Reynares and Anthony Reckard},
pages = {194--195},
url = {http://ceur-ws.org/Vol-3890/#paper-38},
crossref = {SWAT4HCLS2024},
}

@inproceedings{SolankiEtAl:SWAT4HCLS2024,
title = {{MLentory}, an {FDO} registry for machine learning models},
author = {Dhwani Solanki and Nelson Quiñones and Dietrich Rebholz-Schuhmann and Leyla Jael Castro},
pages = {196--197},
url = {http://ceur-ws.org/Vol-3890/#paper-39},
crossref = {SWAT4HCLS2024},
}

@inproceedings{MooreEtAl:SWAT4HCLS2024,
title = {There and back again: {RDF} as a bridge to domain-platforms like {OMERO}},
author = {Josh Moore and Andra Waagmeester and Kristina Hettne and Katherine Wolstencroft and Susanne Kunis},
pages = {198--199},
url = {http://ceur-ws.org/Vol-3890/#paper-40},
crossref = {SWAT4HCLS2024},
}

@inproceedings{MazeinEtAl:SWAT4HCLS2024,
title = {{MeDaX} {Prototype} {v0.2}},
author = {Ilya Mazein and Sarah Braun and Tom Gebhardt and Ron Henkel and Lea Michaelis and Dagmar Waltemath and Judith A. H. Wodke},
pages = {200--201},
url = {http://ceur-ws.org/Vol-3890/#paper-41},
crossref = {SWAT4HCLS2024},
}

@inproceedings{YamaguchiEtAl:SWAT4HCLS2024,
title = {A semantic design for the biological processes associated with intrinsically disordered proteins},
author = {Atsuko Yamaguchi and Yumiko Kado and Shigetaka Sakamoto and Satoshi Fukuchi and Motonori Ota},
pages = {202--203},
url = {http://ceur-ws.org/Vol-3890/#paper-42},
crossref = {SWAT4HCLS2024},
}

@inproceedings{YamamotoFujisawa:SWAT4HCLS2024,
title = {Make {RDF} data more inter-connectable},
author = {Yasunori Yamamoto and Takatomo Fujisawa},
pages = {204--205},
url = {http://ceur-ws.org/Vol-3890/#paper-43},
crossref = {SWAT4HCLS2024},
}

@inproceedings{LiaoEtAl:SWAT4HCLS2024,
title = {{FAIR} {Data} {Cube}, a {FAIR} data infrastructure for integrated multi-omics data analysis},
author = {Xiaofeng Liao and Yuliia Orlova and Cenna Doornbos and Anna Niehues and Casper de Visser and Junda Huang and Thomas H. A. Ederveen and Purva Kulkarni and K. Joeri van der Velde and Morris A. Swertz and Martin Brandt and Alain J. van Gool and Peter A. C. 't Hoen},
pages = {206--207},
url = {http://ceur-ws.org/Vol-3890/#paper-44},
crossref = {SWAT4HCLS2024},
}

@inproceedings{OverkleeftEtAl:SWAT4HCLS2024,
title = {{FAIR} {Software} {as} {a} {Service}: Combining tools to implement {FAIR} for clinical data platforms},
author = {Rick Overkleeft and Sander van Boom and Eric Prud'Hommeaux and Kees Burger and Jip Fransen and Teus Kappen and Luiz Bonino da Silva Santos and Rajaram Kaliyaperumal and Marco Roos},
pages = {208--209},
url = {http://ceur-ws.org/Vol-3890/#paper-45},
crossref = {SWAT4HCLS2024},
}

@inproceedings{VlietstraEtAl:SWAT4HCLS2024,
title = {Vision for modular taxonomy production at {Elsevier}: The {VOICE} project},
author = {Wytze J. Vlietstra and Matthias Albus and Nick Drummond and Simon Jupp and George Georghiou},
pages = {210--211},
url = {http://ceur-ws.org/Vol-3890/#paper-46},
crossref = {SWAT4HCLS2024},
}

@proceedings{SWAT4HCLS2024,
booktitle = {15th International Conference on Semantic Web Applications and Tools for Health Care
              and Life Sciences ({SWAT4HCLS})},
title = {Proceedings of the 15th International Conference on Semantic Web Applications and Tools for Health Care
              and Life Sciences ({SWAT4HCLS})},
year = 2024,
editor = {Marco Roos and Annika Jacobsen and Andrea Splendiani and M. Scott Marshall and Andra Waagmeester and Leyla Jael García Castro and Katherine Wolstencroft and Kristina Hettne and Rutger Vos},
number = 3890,
series = {CEUR Workshop Proceedings},
address = {Aachen},
issn = {1613-0073},
url = {http://ceur-ws.org/Vol-3890/},
venue = {Leiden, The Netherlands},
eventdate = {2024-02-20/2024-02-26},
}

