| Vol-4001 urn:nbn:de:0074-4001-X Copyright © 2025 for the individual papers by the papers' authors. Copyright © 2025 for the volume as a collection by its editors. This volume and its papers are published under the Creative Commons License Attribution 4.0 International (CC BY 4.0).

# SeWeBMeDa 2025
Semantic Web Solutions for Large-Scale Biomedical Data Analytics 2025

### Proceedings of the 8th Workshop on Semantic Web solutions for large-scale biomedical data analytics
co-located with The ESWC 2025: Extended Semantic Web Conference (ESWC 2025)

### Portorož, Slovenia, June 1, 2025.

Edited by

### Rita de Sousa1
Michel Dumontier2
Dietrich Rebholz-Schuhmann3
Ali Hasnain4

1University of Mannheim, Data and web Science Group
2Maastricht University, Institute of Data Science
3Information Centre for Life Sciences , ZB MED
4University of Medicine and Health Science, Pharmacy and Biomolecular Sciences, Royal College of Surgeons in Ireland

## Table of Contents

- Preface
  Summary: There were 14 papers submitted for peer-review to this workshop. Out of these, 5 papers were accepted for this volume, 5 as regular papers and 0 as short papers.

### Session 1: Keynote

- Knowledge Graphs for Explainable Scientific Discovery
  Catia Pesquita

### Session 2: Artificial Intelligence and Large Language Models for Healthcare and Life Sciences

- AI based chatbots vs. traditional search: A systematic comparison of response quality for dementia management information
  Sourav Maiti, Syeda Mah-e-Fatima, Qurratal Ain Fatimah, Ali Hasnain
- Constructing CCEE an LLM evaluation dataset for Complex Context-aware Event Extraction for gene regulatory networks
  Frederik Labonté, Lucie Flek
- Using Clinical Guidelines, Domain Ontology, and LLMs for Personalized Leukemia Treatment Recommendations
  Xingru Xu, Michel Dumontier, Chang Sun

### Session 3: Healthcare and Life Sciences Data Similarity

- LISE: a Logic-based Interactive Similarity Explainer
  Simona Colucci, Francesco Maria Donini, Verdiana Schena

### Session 4: Text, Data and Ontologies in Healthcare and Life Sciences

- Can Language Models Align Biomedical Ontologies?: Evaluating Retrieval-Augmented Prompt Strategies in Bio-ML
  Lucas Ferraz, Pedro Giesteira Cotovio, Catia Pesquita

2025-07-07: submitted by Rita Sousa, metadata incl. bibliographic data published under Creative Commons CC0
2025-07-21: published on CEUR Workshop Proceedings (CEUR-WS.org, ISSN 1613-0073) |valid HTML5|