| Vol-988 urn:nbn:de:0074-988-2 Copyright © 2013 for the individual papers by the papers' authors. Copying permitted only for private and academic purposes. This volume is published and copyrighted by its editors.

# BioPPN 2013
Biological Processes & Petri Nets

### Proceedings of the International Workshop on Biological Processes & Petri Nets, a satellite event of PETRI NETS 2013

### Milano, Italy, June 24, 2013.

Edited by

### Gianfranco Balbo *
Monika Heiner **

* Università degli Studi di Torino, Dipartimento di Informatica, Italy
** Brandenburg University of Technology at Cottbus, Faculty of Mathematics, Natural Sciences and Computer Science, Computer Science Department, Cottbus, Germany

## Table of Contents

- Preface

1. Comparing metabolic pathways through potential fluxes: a selective opening approach 1-15
   Paolo Baldan, Martina Bocci, Nicoletta Cocco, Marta Simeoni
2. Quantitative modelling of biological systems with extended Fuzzy Petri Nets (abstract) 16
   Jure Bordon, Miha Moškon, Miha Mraz
3. Qualitative modelling and analysis of Photosystem II 17-29
   Lubos Brim, Vilém Dĕd, David Šafránek
4. Petri net based modelling and simulation of p16-Cdk4/6-Rb pathway 30-44
   Nimet İlke Çetin, Rza Bashirov, Şükrü Tüzmen
5. Reconstructing X´-deterministic extended Petri nets from experimental time-series data X´ 45-59
   Marie C.F. Favre, Annegret Wagler
6. The foundation of Evolutionary Petri Nets 60-74
   Marco Nobile, Daniela Besozzi, Paolo Cazzaniga, Giancarlo Mauri
7. Identification of key regulators in glycogen utilization in E. coli based on the simulations from a Hybrid Functional Petri Net model 75-88
   Zhongyuan Tian, Adrien Fauré, Hirotada Mori, Hiroshi Matsuno

The whole proceedings can also be downloaded as a single file (PDF, including title pages, preface, table of contents, author index).

22-Jun-2013: submitted by Monika Heiner
23-Jun-2013: published on CEUR-WS.org