What's Changed

• Cap opencv version by @joshqsumner in #1877
• Update threshold_dual_channels.md by @HaleySchuhl in #1853
• use numpy max/min by @joshqsumner in #1875
• normalize option for read_image by @joshqsumner in #1812
• Updated Fs frame labels to Fdarksat and Flightsat for PAM protocols by @nfahlgren in #1882
• Add the geospatial extension to the documentation table of contents by @nfahlgren in #1888
• Update documentation and project files to use custom domain for documentation by @nfahlgren in #1889
• Update open_url test to use self hosted image by @nfahlgren in #1891

Full Changelog: v4.10.2...v4.11

What's Changed

• Add support for CropReporter NPQ protocol by @nfahlgren in #1861
• Fix numpy and altair version issues by @nfahlgren in #1870

Full Changelog: v4.10.1...v4.10.2

What's Changed

• fixing logic that broke homology tutorial by @joshqsumner in #1856
• Make segment_ends robust to missing branch points by @HaleySchuhl in #1647
• fix logic for empty ROIs by @joshqsumner in #1860

Full Changelog: v4.10...v4.10.1

What's Changed

• fixing typo by @joshqsumner in #1755
• Hough circle regional filter by @joshqsumner in #1758
• update FAQ to mention color standardization by @HaleySchuhl in #1762
• Use a self-hosted image for testing by @nfahlgren in #1769
• add "thermal" mode to readimage() by @AFis-245 in #1727
• Add num_acute_pts outputs observation to homology.acute by @HaleySchuhl in #1760
• Add cymk threshold custom range by @HaleySchuhl in #1763
• Rect multi roi by @joshqsumner in #1764
• color_correction.py fixes by @natejly in #1545
• Deepsource fixes for hyper_histogram by @natejly in #1500
• function import syntax update to resolve circular import deepsource issues by @HaleySchuhl in #1777
• Add total_edge_length to pcv.analyze.size and debug updates by @HaleySchuhl in #1772
• manually unpacking tuple by @joshqsumner in #1781
• Filepath metadata by @joshqsumner in #1761
• Homology.pseudolandmarks complexity by @joshqsumner in #1785
• Acute complexity by @joshqsumner in #1786
• Segment insertion angle complexity by @joshqsumner in #1787
• Bump Python versions to 3.11-3.13 by @nfahlgren in #1799
• Flexible img format by @joshqsumner in #1774
• Default all imgformats by @joshqsumner in #1776
• Roi filter within by @joshqsumner in #1771
• crop_position_mask complexity by @joshqsumner in #1780
• json2csv cyclomatic complexity by @joshqsumner in #1784
• visualize.histogram complexity by @joshqsumner in #1782
• Analyze bound horizontal/vertical complexity by @joshqsumner in #1783
• fixed tutorial problem by @joshqsumner in #1808
• Add empty mask handling within filters.obj_props by @HaleySchuhl in #1811
• Support dpi with Altair by @nfahlgren in #1815
• docs: add JalissaPirro as a contributor for code, and doc by @allcontributors[bot] in #1836
• docs: add Sam-Taylor-UIOWA as a contributor for code, and doc by @allcontributors[bot] in #1837
• docs: add marcusdgriff as a contributor for code, doc, and test by @allcontributors[bot] in #1838
• Add "classic mini" color card support by @HaleySchuhl in #1817
• Revise tutorial contribution guide by @nfahlgren in #1841
• Limit altair version to v5, probably bump to v6 of altair in v5 of plantcv by @HaleySchuhl in #1845
• Metadata inspection by @joshqsumner in #1792
• Add easy metadata terms by @joshqsumner in #1798
• adding methods to roi.quick_filter by @joshqsumner in #1818
• add segment_width to morphology tools by @HaleySchuhl in #1844
• Open ended date filter by @joshqsumner in #1823

Full Changelog: v4.9...v4.10

What's Changed

• Rotate transformation is not applied about the center of an image by @NMiklave in #1728
• docs: add caitlynelliott56 as a contributor for code, ideas, and tutorial by @allcontributors[bot] in #1737
• docs: add k034b363 as a contributor for doc, test, and 3 more by @allcontributors[bot] in #1738
• docs: add zhaYdamenaceee as a contributor for tutorial by @allcontributors[bot] in #1739
• Changes made to jupyter.md by @caitlynelliott56 in #1734
• Dilation helper by @joshqsumner in #1741
• Update train kmeans source file by @emmanuel-ferdman in #1747
• Quiet print statements from pcv.homology.acute by @HaleySchuhl in #1730
• Report size marker warning message by @caitlynelliott56 in #1735
• Add support for automatic size scaling using color cards by @HaleySchuhl in #1726
• Regional filter for color card detection by @joshqsumner in #1731
• General rect filter by @joshqsumner in #1740
• Add color card detection squareness parameters by @HaleySchuhl in #1732
• color card corners error by @joshqsumner in #1743
• Check color card squares by @joshqsumner in #1745
• add nano color card support in size scaling by @HaleySchuhl in #1748
• Fix single line of missing code coverage by @nfahlgren in #1751
• Update kmeans inputs by @nfahlgren in #1752

New Contributors

• @caitlynelliott56 made their first contribution in #1734

Full Changelog: v4.8...v4.9

What's Changed

• Removed unnecessary comprehension by @kaitlynrying in #1558
• Add check to train kmeans that inputs must be np arrays by @k034b363 in #1683
• docs: add abrown-37 as a contributor for ideas by @allcontributors in #1698
• Morphology angle Outputs dtype bugfix by @HaleySchuhl in #1696
• Docs update : mvapp link updated and add link to pcvr by @HaleySchuhl in #1694
• Fix colors in visualize.colorize_masks by @k034b363 in #1702
• Update array stacking for color standard processing by @emmanuel-ferdman in #1703
• Add segment_ends and Update morphology tips outputs by @HaleySchuhl in #1644
• update calculation of longest path in analyze.size by @HaleySchuhl in #1700
• Create helpers for color conversion by @nfahlgren in #1708
• Migrate tutorials to the website by @HaleySchuhl in #1709
• Add pcv.transform.mask_color_card function by @HaleySchuhl in #1707
• Add global size parameters to Params class by @HaleySchuhl in #1712
• adding nd2 as a image read mode by @annacasto in #1695
• Add NDCI to spectral indices supported by @HaleySchuhl in #1714
• 1704 cmyk plotting and threshold by @NMiklave in #1705
• docs: add NMiklave as a contributor for code by @allcontributors in #1716
• Create a logical operation helper function by @nfahlgren in #1715
• Pin scipy to <1.16 by @nfahlgren in #1725
• Size scaling implementation in analysis functions by @HaleySchuhl in #1717
• morphology.segment_skeleton returned segment_objects to list by @HaleySchuhl in #1720
• Reduce cyclomatic complexity readbayer by @nfahlgren in #1723

New Contributors

• @NMiklave made their first contribution in #1705

Full Changelog: v4.7...v4.8

What's Changed

• adding json2csv to run-workflow by @joshqsumner in #1658
• docs: add eseigeldanf as a contributor for bug, tutorial, and doc by @allcontributors in #1661
• changing parallelization defaults by @joshqsumner in #1654
• docs: add trogers623 as a contributor for tutorial, and doc by @allcontributors in #1662
• docs: add Sunitalama2 as a contributor for tutorial, and doc by @allcontributors in #1663
• docs: add clhendrikse as a contributor for tutorial, and doc by @allcontributors in #1665
• Update d type in fill_holes.py check by @eseigel in #1668
• Add deprecation warning about label from the detect color card function by @HaleySchuhl in #1664
• Parallelization docs linking by @joshqsumner in #1653
• Fix mask kmeans output type by @k034b363 in #1648
• updating install instructions by @annacasto in #1656
• Update closing.py by @eseigel in #1669
• Linking to scribe tutorial for parallelization by @joshqsumner in #1657
• updating the getting started page by @annacasto in #1659
• Update crop_position_mask.py by @eseigel in #1670
• add metadata to _package_index in spectral_index.py by @HaleySchuhl in #1673
• Update PlantCV installation instructions and conda environment file to use only the conda-forge channel by @nfahlgren in #1681
• add tassel tutorial to gallery (merge updates to tutorial repo first) by @HaleySchuhl in #1642
• Added background image input to visualize.pseudocolor by @rayn-alex in #1680
• Update pinnings to NumPy v2 by @nfahlgren in #1687

New Contributors

• @eseigel made their first contribution in #1668

Full Changelog: v4.6...v4.7

What's Changed

• Speed improvements for creating multiple ROIs by @nfahlgren in #1584
• Update obj props source code by @emmanuel-ferdman in #1611
• docs: add emmanuel-ferdman as a contributor for bug, and doc by @allcontributors in #1612
• docs: add jbraley1107 as a contributor for review, and userTesting by @allcontributors in #1614
• Obj size ecdf docs bugfix by @HaleySchuhl in #1621
• docs: add hkmanching as a contributor for bug by @allcontributors in #1622
• Kmeans grayscale by @leafism9 in #1570
• update prune _debug to plot the other debug img by @HaleySchuhl in #1619
• Make color card chip size a metadata term & Enhance debug pcv.transform.detect_color_card by @HaleySchuhl in #1609
• Minor example code fix by @mlohbihler in #1627
• docs: add mlohbihler as a contributor for bug, and doc by @allcontributors in #1634
• Update arabidopsis_multi_plant_tutorial.md by @zeeuqsze in #1628
• Update seed_analysis_tutorial.md by @zeeuqsze in #1631
• Update morphology_tutorial.md by @zeeuqsze in #1630
• Update watershed_segmentation_tutorial.md by @zeeuqsze in #1632
• docs: add jbraley1107 as a contributor for bug by @allcontributors in #1636
• Auto color correct wrapper by @HaleySchuhl in #1625
• 1615 adding houghcircles by @maliagehan in #1616
• Update grayscale_tutorial.md by @zeeuqsze in #1633

New Contributors

• @emmanuel-ferdman made their first contribution in #1611
• @leafism9 made their first contribution in #1570
• @mlohbihler made their first contribution in #1627

Full Changelog: v4.5.1...v4.6

What's Changed

• Added NPCI and GLI indices to spectral_index by @rayn-alex in #1593
• Add metadata to outputs by @HaleySchuhl in #1594
• mac-and-windows-install-docs by @annacasto in #1586
• Update warn to utilize the verbose global parameter by @nfahlgren in #1600

Full Changelog: v4.5...v4.5.1

What's Changed

• update-to-jupyter-notebook-instructions by @annacasto in #1587
• Fixed bug: crash when ROI was empty by @rayn-alex in #1589
• Add geospatial metadata attribute to spectral_data class by @k034b363 in #1595

Full Changelog: v4.4...v4.5