Bacterial population genetics

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1. PopPUNK PopPUNK Public

   PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

   Python 109 22

2. ggCaller ggCaller Public

   Bifrost graph gene caller.

   C++ 99 6

3. ska.rust ska.rust Public

   Split k-mer analysis – version 2

   Rust 105 9

4. unitig-caller unitig-caller Public

   Methods to determine sequence element (unitig) presence/absence

   C++ 27 3

5. PopPIPE PopPIPE Public

   Population analysis PIPEline 🛠🧬

   Python 26 7

6. sketchlib.rust sketchlib.rust Public

   Fast sequence distance estimates

   Rust 30 6