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1. single-cell-best-practices single-cell-best-practices Public

   https://www.sc-best-practices.org

   Jupyter Notebook 1.2k 277

2. scvelo scvelo Public

   RNA Velocity generalized through dynamical modeling

   Python 506 114

3. scarches scarches Public

   Reference mapping for single-cell genomics

   Jupyter Notebook 406 70

4. scib scib Public

   Benchmarking analysis of data integration tools

   Python 427 76

5. ehrapy ehrapy Public

   Electronic Health Record Analysis with Python.

   Python 356 50

6. moscot moscot Public

   Multi-omic single-cell optimal transport tools

   Python 214 16