Search results

Jobs stuck in "pending", unable to rename subsequent files

Status: Open.

#596 In steineggerlab/foldseek;

· ojazzy16 opened on Jul 16, 2026

foldseek databases ESMAtlas30 ships a DB whose .lookup/header (_h) IDs don't match (same bug class as #465)

Status: Open.

#593 In steineggerlab/foldseek;

· ynishimuraLv opened on Jun 29, 2026

Consulting about rate limits in the API usage

Status: Open.

#591 In steineggerlab/foldseek;

· joao13-vitoras opened on Jun 20, 2026

very short proteins are skipped in foldseek easy-clsuter?

Status: Open.

#589 In steineggerlab/foldseek;

· Huilin-Li opened on Jun 14, 2026

Discrepancy in structural search results due to database-size dependent E-value filtering

Status: Open.

#585 In steineggerlab/foldseek;

· luisbustom-oss opened on May 8, 2026

easy-multimercluster crashes with munmap_chunk(): invalid pointer on mixed-chain-count inputs (regression after v10)

Status: Open.

#584 In steineggerlab/foldseek;

· bviggiano opened on May 7, 2026

Creating a DB using ProstT5 and querying with a pdb file

Status: Open.

#583 In steineggerlab/foldseek;

· draperbarr opened on Apr 29, 2026

Question about the exact pipeline & params used for AFDB v6 clustering

Status: Open.

#582 In steineggerlab/foldseek;

· yzy-pg opened on Apr 26, 2026

conda version does not support interfacelddt as output field

Status: Open.

#580 In steineggerlab/foldseek;

· maven2306 opened on Apr 22, 2026

Foldseek for pairwise structural alignment

Status: Open.

#578 In steineggerlab/foldseek;

· mohammadian-reza opened on Mar 22, 2026

Why are the results so different between CPU and GPU?

Status: Open.

#577 In steineggerlab/foldseek;

· zhulab-yyf opened on Mar 22, 2026

--chainmap option for predefined chain-to-chain mapping of query and reference

Status: Open.

#575 In steineggerlab/foldseek;

· omgol411 opened on Mar 12, 2026