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24-hour genome: end-to-end workflow from blood to analysis

This protocol aims to rapidly produce libraries with a read N50 of ~30 kb and generate ≥30x coverage of the genome, thereby providing sufficient data to robustly call small and ...

Hereditary cancer panel (HCP)

This is an end-to-end method outlining sample extraction, library preparation, sequencing, and data analysis.

Chromatin accessibility know-how document

Chromatin accessibility know-how document | Welcome to Oxford Nanopore technologies. Our goal is to enable the analysis of any living thing, by any person, in any environment

wf-transcriptomes

Transcriptome analysis of cDNA and direct RNA sequencing data.

wf-transcriptome-de

This repository contains a nextflow workflow template that can be used as the basis for creating new workflows.

wf-tb-amr

wf-tb-amr is a workflow for determining the antibiotic resistance of Mycobacterium tuberculosis targeted sequencing samples.

wf-somatic-variation

This workflow calls variants from the alignment files of a paired tumor/normal sample.

wf-single-cell

This workflow extracts cell barcodes and UMIs from 10x-generated single cell libraries. It was initially created as a Nextflow port of Sockeye.

wf-pore-c

Workflow for analysing Pore-c data for chromatin conformation capture.

wf-mpx

This workflow provides a simple way to analyse mpox sequencing data; taking raw Oxford Nanopore Technologies reads and creating a draft consensus and assembly.

wf-metagenomics

This workflow can be used for the taxonomic classification of metagenomic sequencing data.

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