We were thrilled to welcome MP Maggie Chi, Parliamentary Secretary to the Minister of Health, to ProteinQure today! She toured our office and saw firsthand how our AI platform is accelerating drug discovery and enabling better clinical trials. We especially appreciated her inquiry into the unique challenges facing small drug discovery companies in Canada and for engaging in the conversation about time and cost barriers in clinical trials. It's encouraging to see federal leadership genuinely interested in understanding the business realities alongside the science shaping the future of Canadian biotech. We look forward to continuing this dialogue as we work to bring better therapeutics to patients faster. Thanks to U of T Schwartz Reisman Innovation Campus for arranging the visit! 🧬🇨🇦 #AI #DrugDiscovery #ClinicalTrials #Innovation #CanadianBiotech
About us
ProteinQure is building the world’s leading AI platform for peptide drug design, focused on extracellular targets. Our lead program, PQ203 for TOP1-resistant triple-negative breast cancer—a disease with no approved treatment options—has just entered Phase I trials in the US and Canada. Our platform has been validated in collaborations with four of the top 25 pharmaceutical companies and leverages proprietary physics-based methods to explore the largest accessible chemical space, spanning full scaffold diversity and more than 3,500 non-canonical building blocks. Beyond partnerships, we are advancing internal programs that use novel peptides to enable tissue-specific payload delivery, including next-generation approaches for siRNA delivery to the CNS.
- Website
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https://www.proteinqure.com/
External link for ProteinQure
- Industry
- Biotechnology Research
- Company size
- 11-50 employees
- Headquarters
- Toronto, Ontario
- Type
- Privately Held
- Founded
- 2017
Employees at ProteinQure
Locations
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Primary
Get directions
108 College St
Toronto, Ontario M5G 0C6, CA
Updates
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Somewhere in a vendor catalogue is the monomer your peptide drug discovery program needs. Good luck finding it. Today we are releasing the Peptide Monomer Explorer, a searchable interface to the ProteinQure Peptide Monomer Database. Of the 8,000+ monomers in our peptide drug design toolbox, these are the 2,488 that are chemically standardized and carry a commercial source, as of July 2026. This allows drug hunters to find what they need. What is in it: → SMILES in protected and unprotected forms, plus InChIKeys. → Backbone classification across α/β/γ/δ/ε scaffolds. → Natural analogue mapping and a HELM-style shorthand. → Vendor provenance across Bachem, Combi-Blocks, WuXi TIDES and more. → Cross-references to PubChem, PDB, HELM and ChEMBL. What you can do with it: → Search by name, by SMILES, or by the name you only half remember. → Pull the nearest neighbours of any monomer, ranked by Tanimoto similarity. → Open the Chemical Exploration view and explore your favourite monomer’s chemical map, split into four regions: close analogues, potential activity cliffs, putative scaffold hops, and the far edge of the space. → Move the thresholds yourself, because where you draw the line between a close analogue and a scaffold hop is a scientific judgment, not a constant. → Export the filtered subset as TSV, CSV, SDF or JSON, and the plot as PNG. We built it because engineering the next generation of peptide blockbusters should not begin with reconciling six vendor catalogues by hand. We are sharing it because no one should have to build this twice. GitHub and the Explorer are linked in the comments. We want to know which monomer you looked up first. ProteinQure is releasing this database as v1.0.0 under CC BY-SA 4.0, free for academic and commercial use alike. Thank you to the scientists and organizations who provided feedback. David Hymel, Sebastian Swanson, Zoë Adams, Christopher Gartshore, Noah Duffy, Ph.D, Joseph Brown SpiroChem, Combi-Blocks, WuXi Chemistry Explorer: https://lnkd.in/gbUCPEkK BlogPost: https://lnkd.in/g_QwFhxn GitHub: https://lnkd.in/gHt5HG-j #PeptideDrugDiscovery #Cheminformatics #Peptides
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ProteinQure reposted this
Today, on AI Appreciation Day, we're celebrating southern Ontario businesses leveraging artificial intelligence (AI) to develop innovative solutions, strengthen competitiveness and drive economic growth. With support from FedDev Ontario, ProteinQure is advancing its AI-powered drug discovery platform designed to improve targeted drug delivery, helping make cancer treatments more effective, safer for patients and easier to produce. DMD Building Systems is using AI, advanced equipment, robotics and automation to enhance advanced manufacturing in the Greater Toronto Area construction sector, while developing AI-powered engineering tools to improve efficiency and streamline workflows. These companies demonstrate the impact of made-in-Canada AI solutions and their benefits across key sectors, helping position southern Ontario as a leader in innovation. Read about more about southern Ontario innovators in our success stories: https://ow.ly/wcLB50ZnPEj Photo Credits: ProteinQure, DMD Building Systems #AIAppreciationDay #CanadianInnovation #ArtificialIntelligence #SouthON #EconomicGrowth
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We're #hiring a Clinical Project Director/Associate Director to lead clinical operations for our clinical-stage programs, including trial design and execution, CRO/vendor management, safety oversight, and GCP compliance. You'll work across functions to drive key milestones and help advance innovative peptide therapeutics. Interested? Apply below!
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We're looking forward to the BIO International Convention this week. Lucas Siow, ProteinQure CEO, will be onsite discussing partnership opportunities, PQ203, and how AI-powered peptide design is enabling next-generation therapeutics. If you'd like to connect during the conference, please reach out to Lucas Siow.
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ProteinQure reposted this
The CMIE Development Fund (CMIEDF) provides financial support to innovators, developers, and academic institutions in Canada, specifically in the field of radiopharmaceutical and medical isotope technologies. We recently announced over $2 million in funding to support five programs through the CMIEDF's third call for proposals, but we also want to continue to showcase the progress previously funded programs have made. Today we're pleased to highlight Christopher Ing, Co-founder and Chief Scientific Officer at ProteinQure, who shared how CMIEDF funding supported the early-stage development of ProteinQure's AI-designed peptide platform for novel radiopharmaceutical applications. You can learn more about CMIEDF on our website: https://cmie.ca/
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We're #hiring a new Clinical Project Director/Associate Director in Toronto, Ontario. Apply today or share this post with your network.
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Our CEO, Lucas Siow, joined Chris Glover on CBC/Radio-Canada's Metro Morning last week to discuss ProteinQure's Phase 1 clinical trial and the potential of AI-designed peptide therapeutics to transform how medicines are discovered and developed. If you missed the conversation, you can listen here: 🎧 https://lnkd.in/ec7J9jgA We're excited to be advancing the first clinical evaluation of PQ203 and grateful for the opportunity to share how AI-powered drug discovery is helping bring new therapeutic possibilities closer to patients.
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We presented updated PQ203 findings at the 2026 ASCO Annual Meeting during the Developmental Therapeutics—Molecularly Targeted Agents and Tumor Biology poster session. PQ203 is a first-in-class, machine-learning designed peptide-drug conjugate targeting SORT1 in patients with advanced solid tumor malignancies. The Phase 1A/B multi-center clinical trial is evaluating safety, pharmacokinetics, pharmacodynamics, immunogenicity, and preliminary anti-tumor activity. This study reflects the work of investigators, clinical collaborators, and ProteinQure colleagues advancing PQ203 from design into the clinic. We are grateful for their partnership and continued commitment to this program. Read the abstract: https://lnkd.in/e8JPV624 #ASCO26
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AI therapeutics can be homegrown in Canada—from algorithm to patient. We are incredibly proud to announce that ProteinQure received $1.8M from FedDev Ontario’s Regional AI Initiative to advance AI-powered targeted drug delivery and help bring safer, more cost-effective treatments to patients sooner. We are also privileged to be recognized by the Honourable Evan Solomon: https://lnkd.in/eKfUS-va Read the full announcement: https://lnkd.in/eN7B5Ehm
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