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FastFold Suite: A Unified Multi-Model Protein Structure Prediction Platform for Comparative Benchmarking of ESMFold, OmegaFold, and AlphaFold 2
Cameron Ashby MFA, MS Reviewed by Dr. Andreas Marpaung May 2026 Abstract – FastFold Suite is a unified protein structure prediction platform integrating ESMFold, OmegaFold, and AlphaFold 2 into a single Flask-based web application for comparative benchmarking and analysis. This thesis presents the design, implementation, and evaluation of FastFold Suite across 50 CASP14 target proteins…
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Looking Back at the MSCS: A Program Retrospective
Author: Cameron Ashby Date: May 3, 2026 Series: Capstone Development Journal This is the post I wanted to write for a while, but could not write until I was on the other side of the defense. The Master of Science in Computer Science at Full Sail University was twelve months of compressed graduate work, ten…
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Three Runs, Three Days, One Finding: How Iterating on the Benchmark Changed Everything (Except the Answer)
TECH RELEASES Capstone Development Journal | Month 4: Final Benchmark and Defense Preparation Three Runs, Three Days, One Finding: How Iterating on the Benchmark Changed Everything (Except the Answer) Cameron Ashby | March 29, 2026 Series: Capstone Development Journal | Entry 3 of 4 The Goal This is the last month. Defense is in April.…
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