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Elli Papaemmanuil, PhD
953 posts
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Elli Papaemmanuil, PhD
@PapaemmanuilLab
Computational Oncology. Explores 🧬 tech, algorithms & data to improve treatment decisions in oncology. Opinions my own. ICR - Sanger - MSKCC / Isabl.io
Genentech Roche San Francisco
isabl.io
Joined April 2015
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    Elli Papaemmanuil, PhD
    @PapaemmanuilLab
    Dec 4, 2021
    The very nature of extraordinary is to deviate from normative.
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    Elli Papaemmanuil, PhD
    @PapaemmanuilLab
    Mar 14, 2022
    Most cancers have multiple mutations. In unison these define tumor biology, response to Rx & outcomes. Yet model systems & correlative studies focus on single biomarkers.We need clinical decision support tools that account for this heterogeneity. A 🧵 on our recent AML study👇
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    Elli Papaemmanuil, PhD
    @PapaemmanuilLab
    Mar 4, 2020
    I speak in an accent in all three languages that I speak...including Greek. Your accent is your story and it is your journey that informs what you talk about and how you talk about it. That’s what matters. Supporting #diversity in #science and #tech.
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    Elli Papaemmanuil, PhD
    @PapaemmanuilLab
    Jun 12, 2022
    What is the risk conferred by my disease? One of the hardest questions to answer in medicine. A on the development of the International Prognostic Scoring System Molecular in MDS published today
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    evidence.nejm.org
    Molecular International Prognostic Scoring System for Myelodysplastic Syndromes
    Risk stratification and therapeutic decision-making for myelodysplastic syndromes (MDS) are based on the International Prognostic Scoring System–Revised (IPSS-R), which considers hematologic parame...
  • user avatar
    Elli Papaemmanuil, PhD
    @PapaemmanuilLab
    Oct 30, 2022
    4months since publication (bit.ly/3aNEU64), >5K unique users from 65 countries have used the IPSS-M model (mds-risk-model.com) to compute risk for 42,500 patient profiles. High IF journal editor said "not ready for prime time". This is my type of impact factor.
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    evidence.nejm.org
    Molecular International Prognostic Scoring System for Myelodysplastic Syndromes
    Risk stratification and therapeutic decision-making for myelodysplastic syndromes (MDS) are based on the International Prognostic Scoring System–Revised (IPSS-R), which considers hematologic parame...
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    Elli Papaemmanuil, PhD
    @PapaemmanuilLab
    Aug 3, 2020
    Is clinical reporting of acquired gene mutations as present or absent enough to inform cancer diagnosis, risk prognostication and treatment decisions? A thread on our paper published in @NatureMedicine today: go.nature.com/3i12ACk & commentary go.nature.com/3foWxpt
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    Elli Papaemmanuil, PhD
    @PapaemmanuilLab
    Jun 14, 2022
    Study of 570 cancer patients demonstrating clinical utility of whole genome and transcriptome sequencing in advanced metastatic disease. Actionable clinical findings in 83%. annalsofoncology.org/article/S0923-…
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    Elli Papaemmanuil, PhD
    @PapaemmanuilLab
    Dec 11, 2022
    It is clear. If there is one thing we owe to patients, hemato-oncologists, pathologists, clinical trialists, scientists & regulators is to unify the CAC/ICC & WHO classification ASAP. Why wait for the next revision? #ASH22 inspiration
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    Elli Papaemmanuil, PhD
    @PapaemmanuilLab
    Oct 26, 2020
    How do environmental exposures shape the fitness of somatic mutations during cancer development? Could we use this information to identify risk factors and develop preventative strategies? Our clonal hematopoiesis study go.nature.com/3dWboIZ published in @NatureGenet today /1
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    Elli Papaemmanuil, PhD
    @PapaemmanuilLab
    May 18, 2022
    Feasibility of clinical whole genome and transcriptome sequencing (WGTS) in oncology. A 🧵 on our latest study published in Nature Communications today:rdcu.be/cNOyQ
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    Elli Papaemmanuil, PhD
    @PapaemmanuilLab
    Jun 13, 2022
    Last time I left Europe I thought I would be back in a matter of weeks. Its been 30 months. Coming back, makes me realize how much I have missed It. The people, architecture, the hidden history in every corner, the pace of life & how accessible to most, quality of life is here💙
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    Elli Papaemmanuil, PhD
    @PapaemmanuilLab
    Nov 21, 2019
    Thrilled to share a preprint of our Clonal Hematopoiesis study in 24K cancer pts profiled by #MSKimpact @sloan_kettering showing how therapy, age+smoking shape the fitness of distinct CH mutations with implications for management+prevention of tMN risk bit.ly/34acSJL
  • user avatar
    Elli Papaemmanuil, PhD
    @PapaemmanuilLab
    Feb 6, 2019
    In our lab every day is a world cancer day 🇺🇸🇹🇷🇵🇱🇪🇸🇳🇪🇮🇷🇫🇷🇷🇺🇨🇦🇨🇴🇿🇦🇯🇲🇨🇳🇲🇦🇮🇪🇳🇴🇸🇪🇮🇹🇬🇷🇮🇱🏳️‍🌈🚩 celebrating diversity, learning about cancer.
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    Elli Papaemmanuil, PhD
    @PapaemmanuilLab
    Dec 20, 2019
    Fascinating new data on the significance of TP53 allelic state on genome stability and clinical outcomes in MDS (n>4,000). High risk disease disease presentation is specific to bi-allelic TP53 but not mono allelic events (33% of TP53) bit.ly/TP53MDS

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