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Loïc A. Royer 💻🔬⚗️
5,554 posts
Loïc A. Royer 💻🔬⚗️
@loicaroyer
- 🚨 #ChatGPT + @napari_imaging 🚨 Releasing my latest weekend project: Omega, an autonomous LLM agent that writes image processing and analysis code, fixes its mistakes, accesses the napari viewer, makes widgets, & more! github.com/royerlab/napar… @langchain @OpenAI #OmegaAgent
00:00 - Exciting job opportunity! 🚀 My team at @czbiohub SF is hiring a motivated and ambitious Research Assistant! (Bachelor or Master level) Join us to work at the intersection of developmental biology🥚, cutting-edge imaging🔬, and molecular biology & genomics🧬. You will learn a
00:00 - 🚨Big news! Five years in the making, our Zebrahub paper is now published in #Cell 🎉. We’ve built a timecourse atlas of zebrafish embryonic development, combining #scRNAseq data and #lightsheet live imaging, and delved deep into the dynamics of key progenitors.
00:00 - We present #Zebrahub: a timecourse atlas of zebrafish embryonic development, combining #scRNAseq time-course data with #lightsheet live imaging. Explore our seq. and imaging datasets interactively at biorxiv.org/content/10.110… zebrahub.org 1/n
00:00 - PI trying to finish a paper despite incessant problems, meetings, and a million other distractions.
- Want to build an adaptive multi-view lightsheet microscope? Following our @NatureBiotech and @CellCellPress papers, we provide step-by-step instructions in @NatureProtocols : doi.org/10.1038/s41596… Read it here for free: rdcu.be/96Zo @czbiohub @HHMIJanelia
00:00 - Want to improve the quality of your microscopy images with the magic of Deep Learning? Our CARE paper is now out in @naturemethods. dx.doi.org/10.1038/s41592… Congrats to @martweig et al. @mpicbg @csbdresden @czbiohub #CARE #DeepLearning #AI
00:00 - 📡 Big day today! Our first #singlecell RNAseq dataset is now live on #Zebrahub: 10 #zebrafish developmental stages, 40 individual embryos, ~120'000 cells. Dataset spans end-of-gastrulation to 10-day larvae. Portal: zebrahub.ds.czbiohub.org Dataset: doi.org/10.6084/m9.fig… 1/n
00:00 - Looking forward to present our latest work on #scRNAseq, #lightsheet imaging, and more, at a joint seminar between the comp bio & dev bio departments of the @institutpasteur . Thanks @zenlabpasteur & Christophe Zimmer for the invite! (Ullmann aud, Monday 11th at 1PM)
00:00 - We are excited to release Aydin, a user-friendly, feature-rich, and fast image denoising tool. Fantastic work by @_AhmetCanSolak , @liilii_tweet, and @czbiohub alumni @thebasepoint royerlab.github.io/aydin #image #denoising #Microscopy #Python #automagic 1/n
00:00 - 📡🧵 Excited to release our preprint: Ultrack: Pushing the Limits of Cell Tracking Across Biological Scales doi.org/10.1101/2024.0… A tour-de-force by @jobragantini, #Ultrack is a versatile, highly accurate, and fast ILP-based cell tracking software for 2D, 3D, and multicolor
00:00 - Super excited to present cytoself — our deep learning method for fully self-supervised protein localisation profiling and clustering. Fantastic work by @liilii_tweet together with our @czbiohub colleagues @kchev and @LeonettiManuel. biorxiv.org/cgi/content/sh… 1/n
00:00 - Super happy to see DaXi -- the lab's first major microscope design published in @naturemethods . @Bin_YANG_Optics put a lot of work into it with help from many including @Merlin_Lange @jobragantini @amsikking @AndrewGYork and many more
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