Journals needing scripts

[willpearse]

• Elsevier
• PNAS (...doesn't seem to have SIs other than PDFs, but check)
• Nature
• Frontiers in ...
• Cell (TREE et al.)
• ESA journals - not every one of them seems to use Archives

[willpearse]

url <- paste0("http://www.pnas.org",.grep.url(paste0("http://www.pnas.org/lookup/doi/",doi), "(/content/)[0-9/]*"),".abstract")
could help with PNAS

[willpearse]

Elsevier is officially unintelligible to me. I've no idea how the redirects are working, and I just can't do it :-(

[willpearse]

• Elsevier
• PNAS
• Nature
• Frontiers in XXX
• Cell (TREE etc.)
• Cambridge dissertations and other misc. (see The DataCite DOI schema has relationType IsSupplementedBy #10 )

[rossmounce]

...as well as, in no particular order...

• Pensoft
  28 journals all open access and on the same platform tech (ARPHA). Here's an example article from Deutsche Entomologische Zeitschrift with two suppdata files: https://doi.org/10.3897/dez.65.21000
  a) https://doi.org/10.3897/dez.95.21000.suppl1 b) https://doi.org/10.3897/dez.95.21000.suppl2

• Ubiquity Press
  ?? journals, all (?) open access and on the same platform tech. Here's an example article from Open Quaternary with one suppdata file: http://doi.org/10.5334/oq.32 a) https://doi.org/10.5334/oq.32.s1

• Copernicus Publications
  40 journals, all open access and on the same platform tech. Here's an example article from Biogeosciences with one suppdata file: https://doi.org/10.5194/bg-14-1739-2017 a) https://www.biogeosciences.net/14/1739/2017/bg-14-1739-2017-supplement.zip

• Hindawi
  Over 250 open access journals all on the same platform tech. Here's an example article from International Journal of Ecology with one suppdata file: https://doi.org/10.1155/2017/5620125 b) https://www.hindawi.com/journals/ijecol/2017/5620125/#supplementary-material-1 ▶️ http://downloads.hindawi.com/journals/ijecol/2017/5620125.f1.docx

• MDPI
  Over 190 open access journals on the same platform tech. Here's an example article from Molecules with one suppdata file: https://doi.org/10.3390/molecules22050681 a) http://www.mdpi.com/1420-3049/22/5/681#supplementary ▶️ http://www.mdpi.com/1420-3049/22/5/681/s1

• Cambridge University Press
  Over 380 journals on the same platform tech. Here's an example article from Oryx with one suppdata file: https://doi.org/10.1017/S0030605315001246 a) https://www.cambridge.org/core/journals/oryx/article/taking-the-elephant-out-of-the-room-and-into-the-corridor-can-urban-corridors-work/4C43E703569F63FEA771EB61D327F4F2#supplementary-materials ▶️ https://static.cambridge.org/resource/id/urn:cambridge.org:id:binary:20170303101053109-0421:S0030605315001246:S0030605315001246sup001.pdf

• Taylor and Francis Online
  Loads of journals on the same platform. Here's an example article from Zoology and Ecology with one suppdata file: https://doi.org/10.1080/21658005.2017.1366293 a) https://www.tandfonline.com/doi/suppl/10.1080/21658005.2017.1366293?scroll=top ▶️ https://doi.org/10.6084/m9.figshare.5350366

• BioOne
  Over 200 journals all on the same platform. Here's an example article from Journal of Parasitology with one suppdata file: https://doi.org/10.1645/17-15 a) http://www.bioone.org/doi/suppl/10.1645/17-15 ▶️ http://www.bioone.org/doi/suppl/10.1645/17-15/suppl_file/10.1645_17-15.s1.docx

• SAGE Journals
  ~1,000 journals all on the same platform. Here's an example article from American Sociological Review with two suppdata files: https://doi.org/10.1177/0003122415621900 a) http://journals.sagepub.com/doi/suppl/10.1177/0003122415621900 ▶️ http://journals.sagepub.com/doi/suppl/10.1177/0003122415621900/suppl_file/england_online_supplement.pdf and http://journals.sagepub.com/doi/suppl/10.1177/0003122415621900/suppl_file/England_february_2016_media_abstracts.pdf

• Royal Society of Chemistry Publishing
  Over 80 journals on the same platform. Here's an example article from Chemical Communications with one suppdata file: https://doi.org/10.1039/C8CC01172A a) http://www.rsc.org/suppdata/c8/cc/c8cc01172a/c8cc01172a1.pdf

• Company of Biologists (the not open access journals & articles)
  This publisher is somewhat complicated. It has five journals. The two open access ones Disease Models & Mechanisms and Biology Open can have their supplementary data accessed via the existing EuropePMC method. But for the three closed access journals Development , Journal of Cell Science and Journal of Experimental Biology a specific per-publisher script is needed. Here's an example article from Development with one suppdata file: https://doi.org/10.1242/dev.160382 a) http://dev.biologists.org/lookup/doi/10.1242/dev.160382.supplemental ▶️ http://dev.biologists.org/highwire/filestream/1248938/field_highwire_adjunct_files/0/DEV160382supp.pdf
  BMJ Journals, eLife, F1000Research, Wellcome Open Research, Gates Open Research All covered via EuropePMC method

[rossmounce]

PS I would retitle the thread (is that possible on GH?) to 'publisher platforms needing scripts' as the problem is per platform tech, not per journal (thankfully!)

[rossmounce]

I see you've listed Cell Press as distinct from Elsevier? Why?

You can access the Cell Press imprint journals through the ScienceDirect platform, like other non-Cell Press Elsevier journals. Why implement two distinct methods when one would suffice? Suggest you merge the two as "Elsevier inc. Cell Press journals (ScienceDirect)" or some such notation.

[nuest]

May I add some to the list?

• PeerJ
• JStatSoft (potentially with a generic function for OJS journals)

Are there any guidelines or step-by-step instructions for how to add a journal?

Update: Working on Copernicus Publications now!

[willpearse]

PeerJ would be a great one to add, thanks!

The instructions are here: https://github.com/ropensci/suppdata/blob/master/CONTRIBUTING.md. If you need any help with it, please just ask (maybe make a separate issue or something). Thanks very much!