Feature/888 stansummary ci arg

[mitzimorris]

Submisison Checklist

• Run tests: ./runCmdStanTests.py src/test
• Declare copyright holder and open-source license: see below

Summary:

Added new argument "-percentiles" which takes as value a string consisting
of a set of comma-separated integers between 0 and 100, which will be used
to get the quantiles for all values in the Stan csv output files.

Intended Effect:

see #888

How to Verify:

Test via command line:

• no --percentiles arg specified, or --percentiles "5,50,95", - output same as current dev version.

• --percentiles values "10,50,90", or "5,20,40,75,99" - etc - will output corresponding quantile values accordingly.

Side Effects:

Now using boost::program_options to parse args; makefile changed accordingly.

Documentation:

Copyright and Licensing

Please list the copyright holder for the work you are submitting (this will be you or your assignee, such as a university or company): Columbia U
By submitting this pull request, the copyright holder is agreeing to license the submitted work under the following licenses:

• Code: BSD 3-clause (https://opensource.org/licenses/BSD-3-Clause)
• Documentation: CC-BY 4.0 (https://creativecommons.org/licenses/by/4.0/)

[mitzimorris]

preliminary PR, still need to update docs and write some unit tests.

I've plumbed in the minimal changes necessary to get this feature to work. the stansummary code really needs to be cleaned up / refactored. opinions on how much to do for this PR?

[mitzimorris]

@rok-cesnovar - many thanks for your help and explanations!

[stan-buildbot]

---

Name	Old Result	New Result	Ratio	Performance change( 1 - new / old )
gp_pois_regr/gp_pois_regr.stan	4.08	4.1	0.99	-0.65% slower
low_dim_corr_gauss/low_dim_corr_gauss.stan	0.02	0.02	1.02	1.74% faster
eight_schools/eight_schools.stan	0.09	0.09	1.03	2.71% faster
gp_regr/gp_regr.stan	0.19	0.19	0.99	-1.13% slower
irt_2pl/irt_2pl.stan	5.23	5.26	0.99	-0.66% slower
performance.compilation	85.34	84.13	1.01	1.43% faster
low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan	7.72	7.71	1.0	0.1% faster
pkpd/one_comp_mm_elim_abs.stan	20.29	20.97	0.97	-3.38% slower
sir/sir.stan	99.86	99.76	1.0	0.1% faster
gp_regr/gen_gp_data.stan	0.04	0.05	0.99	-1.29% slower
low_dim_gauss_mix/low_dim_gauss_mix.stan	3.02	3.02	1.0	0.07% faster
pkpd/sim_one_comp_mm_elim_abs.stan	0.31	0.32	0.97	-2.92% slower
arK/arK.stan	2.4	2.4	1.0	-0.04% slower
arma/arma.stan	0.6	0.59	1.01	1.44% faster
garch/garch.stan	0.58	0.58	1.0	-0.28% slower
Mean result: 0.998413024667

---

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Commit hash: 4be5970

---

Machine information

ProductName: Mac OS X ProductVersion: 10.11.6 BuildVersion: 15G22010

CPU:
Intel(R) Xeon(R) CPU E5-1680 v2 @ 3.00GHz

G++:
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

Clang:
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

[stan-buildbot]

---

Name	Old Result	New Result	Ratio	Performance change( 1 - new / old )
gp_pois_regr/gp_pois_regr.stan	4.06	3.97	1.02	2.21% faster
low_dim_corr_gauss/low_dim_corr_gauss.stan	0.02	0.02	0.96	-4.18% slower
eight_schools/eight_schools.stan	0.09	0.09	1.0	0.45% faster
gp_regr/gp_regr.stan	0.19	0.19	1.0	-0.36% slower
irt_2pl/irt_2pl.stan	5.28	5.23	1.01	1.0% faster
performance.compilation	85.55	84.11	1.02	1.69% faster
low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan	7.73	7.79	0.99	-0.72% slower
pkpd/one_comp_mm_elim_abs.stan	20.57	21.85	0.94	-6.2% slower
sir/sir.stan	97.34	92.61	1.05	4.86% faster
gp_regr/gen_gp_data.stan	0.04	0.05	0.97	-2.87% slower
low_dim_gauss_mix/low_dim_gauss_mix.stan	3.02	3.02	1.0	-0.08% slower
pkpd/sim_one_comp_mm_elim_abs.stan	0.31	0.32	0.96	-3.64% slower
arK/arK.stan	2.41	2.42	1.0	-0.3% slower
arma/arma.stan	0.6	0.59	1.01	0.98% faster
garch/garch.stan	0.58	0.59	1.0	-0.32% slower
Mean result: 0.995739643019

---

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Commit hash: 19a2c60

---

Machine information

ProductName: Mac OS X ProductVersion: 10.11.6 BuildVersion: 15G22010

CPU:
Intel(R) Xeon(R) CPU E5-1680 v2 @ 3.00GHz

G++:
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

Clang:
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

[stan-buildbot]

---

Name	Old Result	New Result	Ratio	Performance change( 1 - new / old )
gp_pois_regr/gp_pois_regr.stan	4.04	4.09	0.99	-1.21% slower
low_dim_corr_gauss/low_dim_corr_gauss.stan	0.02	0.02	0.98	-2.51% slower
eight_schools/eight_schools.stan	0.09	0.09	1.0	-0.21% slower
gp_regr/gp_regr.stan	0.2	0.19	1.05	5.21% faster
irt_2pl/irt_2pl.stan	5.26	5.32	0.99	-1.09% slower
performance.compilation	85.64	84.26	1.02	1.6% faster
low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan	7.78	7.73	1.01	0.65% faster
pkpd/one_comp_mm_elim_abs.stan	20.3	21.21	0.96	-4.48% slower
sir/sir.stan	91.22	103.11	0.88	-13.03% slower
gp_regr/gen_gp_data.stan	0.04	0.05	0.94	-5.97% slower
low_dim_gauss_mix/low_dim_gauss_mix.stan	3.03	3.02	1.0	0.24% faster
pkpd/sim_one_comp_mm_elim_abs.stan	0.31	0.31	1.02	1.92% faster
arK/arK.stan	2.4	2.41	1.0	-0.2% slower
arma/arma.stan	0.59	0.6	0.99	-0.63% slower
garch/garch.stan	0.58	0.59	1.0	-0.5% slower
Mean result: 0.988176112955

---

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Commit hash: d109e6c

---

Machine information

ProductName: Mac OS X ProductVersion: 10.11.6 BuildVersion: 15G22010

CPU:
Intel(R) Xeon(R) CPU E5-1680 v2 @ 3.00GHz

G++:
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

Clang:
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

[stan-buildbot]

---

Name	Old Result	New Result	Ratio	Performance change( 1 - new / old )
gp_pois_regr/gp_pois_regr.stan	4.05	4.03	1.0	0.44% faster
low_dim_corr_gauss/low_dim_corr_gauss.stan	0.02	0.02	1.0	-0.15% slower
eight_schools/eight_schools.stan	0.09	0.09	0.99	-0.63% slower
gp_regr/gp_regr.stan	0.19	0.19	0.99	-1.02% slower
irt_2pl/irt_2pl.stan	5.28	5.3	1.0	-0.34% slower
performance.compilation	85.47	84.17	1.02	1.52% faster
low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan	7.79	7.71	1.01	1.08% faster
pkpd/one_comp_mm_elim_abs.stan	20.75	21.15	0.98	-1.93% slower
sir/sir.stan	92.74	103.34	0.9	-11.43% slower
gp_regr/gen_gp_data.stan	0.04	0.04	0.98	-1.85% slower
low_dim_gauss_mix/low_dim_gauss_mix.stan	3.04	3.02	1.0	0.48% faster
pkpd/sim_one_comp_mm_elim_abs.stan	0.31	0.31	1.0	0.44% faster
arK/arK.stan	2.4	2.44	0.98	-1.8% slower
arma/arma.stan	0.59	0.59	0.99	-0.67% slower
garch/garch.stan	0.58	0.59	1.0	-0.27% slower
Mean result: 0.990138541748

---

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Commit hash: 901634e

---

Machine information

ProductName: Mac OS X ProductVersion: 10.11.6 BuildVersion: 15G22010

CPU:
Intel(R) Xeon(R) CPU E5-1680 v2 @ 3.00GHz

G++:
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

Clang:
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

[stan-buildbot]

---

Name	Old Result	New Result	Ratio	Performance change( 1 - new / old )
gp_pois_regr/gp_pois_regr.stan	4.09	3.95	1.04	3.5% faster
low_dim_corr_gauss/low_dim_corr_gauss.stan	0.02	0.02	0.97	-2.7% slower
eight_schools/eight_schools.stan	0.09	0.09	0.99	-1.39% slower
gp_regr/gp_regr.stan	0.19	0.19	0.98	-1.68% slower
irt_2pl/irt_2pl.stan	5.28	5.25	1.01	0.51% faster
performance.compilation	86.52	84.2	1.03	2.68% faster
low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan	7.71	7.71	1.0	0.07% faster
pkpd/one_comp_mm_elim_abs.stan	20.39	21.13	0.97	-3.61% slower
sir/sir.stan	93.78	91.41	1.03	2.52% faster
gp_regr/gen_gp_data.stan	0.04	0.04	0.97	-2.69% slower
low_dim_gauss_mix/low_dim_gauss_mix.stan	3.02	3.07	0.98	-1.65% slower
pkpd/sim_one_comp_mm_elim_abs.stan	0.31	0.32	0.99	-0.75% slower
arK/arK.stan	2.44	2.41	1.01	1.07% faster
arma/arma.stan	0.59	0.59	1.0	0.32% faster
garch/garch.stan	0.59	0.59	1.0	-0.44% slower
Mean result: 0.997603674937

---

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Commit hash: d734848

---

Machine information

ProductName: Mac OS X ProductVersion: 10.11.6 BuildVersion: 15G22010

CPU:
Intel(R) Xeon(R) CPU E5-1680 v2 @ 3.00GHz

G++:
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

Clang:
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

[stan-buildbot]

---

Name	Old Result	New Result	Ratio	Performance change( 1 - new / old )
gp_pois_regr/gp_pois_regr.stan	4.13	4.11	1.01	0.67% faster
low_dim_corr_gauss/low_dim_corr_gauss.stan	0.02	0.02	1.01	1.09% faster
eight_schools/eight_schools.stan	0.09	0.09	0.99	-0.8% slower
gp_regr/gp_regr.stan	0.19	0.19	1.0	-0.04% slower
irt_2pl/irt_2pl.stan	5.28	5.23	1.01	0.91% faster
performance.compilation	86.9	84.06	1.03	3.28% faster
low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan	7.72	7.76	0.99	-0.62% slower
pkpd/one_comp_mm_elim_abs.stan	21.92	20.41	1.07	6.87% faster
sir/sir.stan	91.72	91.16	1.01	0.62% faster
gp_regr/gen_gp_data.stan	0.04	0.04	1.0	-0.22% slower
low_dim_gauss_mix/low_dim_gauss_mix.stan	3.02	3.02	1.0	-0.06% slower
pkpd/sim_one_comp_mm_elim_abs.stan	0.31	0.31	1.01	0.9% faster
arK/arK.stan	2.41	2.42	0.99	-0.51% slower
arma/arma.stan	0.6	0.6	1.0	-0.35% slower
garch/garch.stan	0.58	0.59	1.0	-0.26% slower
Mean result: 1.00809815915

---

Jenkins Console Log
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Commit hash: d734848

---

Machine information

ProductName: Mac OS X ProductVersion: 10.11.6 BuildVersion: 15G22010

CPU:
Intel(R) Xeon(R) CPU E5-1680 v2 @ 3.00GHz

G++:
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

Clang:
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

[stan-buildbot]

---

Name	Old Result	New Result	Ratio	Performance change( 1 - new / old )
gp_pois_regr/gp_pois_regr.stan	4.01	4.02	1.0	-0.19% slower
low_dim_corr_gauss/low_dim_corr_gauss.stan	0.02	0.02	1.0	0.22% faster
eight_schools/eight_schools.stan	0.09	0.09	0.96	-4.22% slower
gp_regr/gp_regr.stan	0.2	0.19	1.02	2.33% faster
irt_2pl/irt_2pl.stan	5.26	5.28	1.0	-0.4% slower
performance.compilation	85.34	84.2	1.01	1.34% faster
low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan	7.69	7.72	1.0	-0.31% slower
pkpd/one_comp_mm_elim_abs.stan	21.26	20.94	1.01	1.47% faster
sir/sir.stan	93.59	98.55	0.95	-5.3% slower
gp_regr/gen_gp_data.stan	0.04	0.05	0.97	-3.56% slower
low_dim_gauss_mix/low_dim_gauss_mix.stan	3.02	3.04	0.99	-0.59% slower
pkpd/sim_one_comp_mm_elim_abs.stan	0.31	0.31	1.01	1.16% faster
arK/arK.stan	2.41	2.41	1.0	0.07% faster
arma/arma.stan	0.59	0.59	1.0	-0.16% slower
garch/garch.stan	0.59	0.58	1.01	1.48% faster
Mean result: 0.996022690617

---

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Commit hash: 4f46896

---

Machine information

ProductName: Mac OS X ProductVersion: 10.11.6 BuildVersion: 15G22010

CPU:
Intel(R) Xeon(R) CPU E5-1680 v2 @ 3.00GHz

G++:
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

Clang:
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

[stan-buildbot]

---

Name	Old Result	New Result	Ratio	Performance change( 1 - new / old )
gp_pois_regr/gp_pois_regr.stan	3.99	4.03	0.99	-0.77% slower
low_dim_corr_gauss/low_dim_corr_gauss.stan	0.02	0.02	0.96	-3.84% slower
eight_schools/eight_schools.stan	0.09	0.09	1.0	-0.04% slower
gp_regr/gp_regr.stan	0.19	0.19	1.0	-0.27% slower
irt_2pl/irt_2pl.stan	5.25	5.27	1.0	-0.38% slower
performance.compilation	85.49	84.17	1.02	1.54% faster
low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan	7.72	7.71	1.0	0.09% faster
pkpd/one_comp_mm_elim_abs.stan	20.67	21.03	0.98	-1.73% slower
sir/sir.stan	93.73	91.34	1.03	2.55% faster
gp_regr/gen_gp_data.stan	0.04	0.04	1.0	0.23% faster
low_dim_gauss_mix/low_dim_gauss_mix.stan	3.03	3.02	1.0	0.11% faster
pkpd/sim_one_comp_mm_elim_abs.stan	0.31	0.33	0.96	-4.3% slower
arK/arK.stan	2.42	2.41	1.0	0.41% faster
arma/arma.stan	0.59	0.6	1.0	-0.4% slower
garch/garch.stan	0.58	0.59	1.0	-0.29% slower
Mean result: 0.995580534188

---

Jenkins Console Log
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Commit hash: 51cdd4d

---

Machine information

ProductName: Mac OS X ProductVersion: 10.11.6 BuildVersion: 15G22010

CPU:
Intel(R) Xeon(R) CPU E5-1680 v2 @ 3.00GHz

G++:
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

Clang:
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

[stan-buildbot]

---

Name	Old Result	New Result	Ratio	Performance change( 1 - new / old )
gp_pois_regr/gp_pois_regr.stan	4.0	4.0	1.0	-0.09% slower
low_dim_corr_gauss/low_dim_corr_gauss.stan	0.02	0.02	1.02	2.1% faster
eight_schools/eight_schools.stan	0.09	0.09	1.0	-0.31% slower
gp_regr/gp_regr.stan	0.2	0.19	1.01	1.17% faster
irt_2pl/irt_2pl.stan	5.26	5.27	1.0	-0.21% slower
performance.compilation	86.74	84.57	1.03	2.5% faster
low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan	7.78	7.73	1.01	0.7% faster
pkpd/one_comp_mm_elim_abs.stan	20.87	21.42	0.97	-2.64% slower
sir/sir.stan	96.39	99.62	0.97	-3.36% slower
gp_regr/gen_gp_data.stan	0.05	0.04	1.03	3.26% faster
low_dim_gauss_mix/low_dim_gauss_mix.stan	3.02	3.03	1.0	-0.39% slower
pkpd/sim_one_comp_mm_elim_abs.stan	0.33	0.33	0.99	-0.86% slower
arK/arK.stan	2.42	2.42	1.0	-0.03% slower
arma/arma.stan	0.6	0.59	1.0	0.46% faster
garch/garch.stan	0.59	0.59	1.0	-0.28% slower
Mean result: 1.00163833326

---

Jenkins Console Log
Blue Ocean
Commit hash: 51cdd4d

---

Machine information

ProductName: Mac OS X ProductVersion: 10.11.6 BuildVersion: 15G22010

CPU:
Intel(R) Xeon(R) CPU E5-1680 v2 @ 3.00GHz

G++:
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

Clang:
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

[stan-buildbot]

---

Name	Old Result	New Result	Ratio	Performance change( 1 - new / old )
gp_pois_regr/gp_pois_regr.stan	4.02	4.02	1.0	0.09% faster
low_dim_corr_gauss/low_dim_corr_gauss.stan	0.02	0.02	1.0	-0.46% slower
eight_schools/eight_schools.stan	0.09	0.09	1.0	-0.25% slower
gp_regr/gp_regr.stan	0.19	0.19	0.99	-0.54% slower
irt_2pl/irt_2pl.stan	5.26	5.34	0.99	-1.45% slower
performance.compilation	85.46	84.4	1.01	1.24% faster
low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan	7.72	7.71	1.0	0.24% faster
pkpd/one_comp_mm_elim_abs.stan	20.32	20.76	0.98	-2.2% slower
sir/sir.stan	91.33	98.67	0.93	-8.04% slower
gp_regr/gen_gp_data.stan	0.05	0.04	1.03	2.67% faster
low_dim_gauss_mix/low_dim_gauss_mix.stan	3.03	3.03	1.0	0.1% faster
pkpd/sim_one_comp_mm_elim_abs.stan	0.32	0.32	1.02	1.69% faster
arK/arK.stan	2.43	2.44	1.0	-0.4% slower
arma/arma.stan	0.6	0.6	1.0	0.24% faster
garch/garch.stan	0.58	0.59	0.99	-0.54% slower
Mean result: 0.995463251544

---

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Commit hash: a79fca5

---

Machine information

ProductName: Mac OS X ProductVersion: 10.11.6 BuildVersion: 15G22010

CPU:
Intel(R) Xeon(R) CPU E5-1680 v2 @ 3.00GHz

G++:
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

Clang:
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

[stan-buildbot]

---

Name	Old Result	New Result	Ratio	Performance change( 1 - new / old )
gp_pois_regr/gp_pois_regr.stan	3.99	4.06	0.98	-1.8% slower
low_dim_corr_gauss/low_dim_corr_gauss.stan	0.02	0.02	0.98	-2.36% slower
eight_schools/eight_schools.stan	0.09	0.09	1.06	6.04% faster
gp_regr/gp_regr.stan	0.2	0.19	1.03	2.74% faster
irt_2pl/irt_2pl.stan	5.3	5.27	1.01	0.55% faster
performance.compilation	86.65	84.53	1.03	2.45% faster
low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan	7.69	7.71	1.0	-0.28% slower
pkpd/one_comp_mm_elim_abs.stan	20.19	21.09	0.96	-4.45% slower
sir/sir.stan	91.15	91.47	1.0	-0.36% slower
gp_regr/gen_gp_data.stan	0.04	0.04	0.98	-1.99% slower
low_dim_gauss_mix/low_dim_gauss_mix.stan	3.03	3.02	1.0	0.19% faster
pkpd/sim_one_comp_mm_elim_abs.stan	0.32	0.34	0.92	-8.42% slower
arK/arK.stan	2.4	2.42	0.99	-0.95% slower
arma/arma.stan	0.6	0.59	1.0	0.06% faster
garch/garch.stan	0.59	0.59	1.0	-0.07% slower
Mean result: 0.995241792986

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Jenkins Console Log
Blue Ocean
Commit hash: a79fca5

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Machine information

ProductName: Mac OS X ProductVersion: 10.11.6 BuildVersion: 15G22010

CPU:
Intel(R) Xeon(R) CPU E5-1680 v2 @ 3.00GHz

G++:
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

Clang:
Apple LLVM version 7.0.2 (clang-700.1.81)
Target: x86_64-apple-darwin15.6.0
Thread model: posix

[rok-cesnovar]

The windows makefile gods required some more worship. Its working now.

[rok-cesnovar]

All this logic is required so we only build one .a file (the one with the bit-ness of the system). On windows boost otherwise builds two files and the filename is libboost_program_options-something-x64-1_72.a.

[mitzimorris]

@rok-cesnovar many many thanks!!! beginning to consider you a windows makefile god.