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@LIBDrstats

LIBD rstats club

@LIBDrstats
Researchers at the @LieberInstitute learning, blogging & talking about #rstats, 📦s, @Bioconductor, #bioinformatics (our own opinions) Admin: @lcolladotor
Baltimore, MD
research.libd.org/rstatsclub/
Joined March 2018
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  • Pinned
    @LIBDrstats
    LIBD rstats club
    @LIBDrstats
    Sep 20, 2023
    We just created our new profile on that social media network people have been joining recently! See you there! Find us as @LIBDrstats.🌌.social ;)
  • @LIBDrstats
    LIBD rstats club
    @LIBDrstats
    Nov 22, 2024
    Check out this journal club presentation by Nick Eagles on: > #ENACT: End-to-End Analysis of Visium High Definition (HD) Data Nick also compared #ENACT against #bin2cell #VisiumHD @10xGenomics #PyStats 📼 youtu.be/0D6l01ArI9M
    @lcolladotor
    🇲🇽 Leonardo Collado-Torres
    @lcolladotor
    Oct 9, 2024
    🆕 journal club by Nick Eagles "#Bin2cell reconstructs cells from high resolution #VisiumHD data" by Polański @RBartolom et al from @teichlab @YayonNadav labs 📜 doi.org/10.1093/bioinf… 🛝 speakerdeck.com/nickeagles/exp… 📽️ youtu.be/ZY9N4spEZ_Q @10xGenomics x.com/teichlab/statu…
  • @LIBDrstats
    LIBD rstats club
    @LIBDrstats
    Nov 7, 2024
    Manisha Barse presented with us for the first time! She explained the metrics summary CSV files generated by SpaceRanger by @10xGenomics when processing #Visium spatially-resolved transcriptomics data 🛝 speakerdeck.com/manishabarse/e… 📽️ youtu.be/cJqsbDh0ZtI Data viz with #RStats
    1
  • @LIBDrstats
    LIBD rstats club
    @LIBDrstats
    Aug 30, 2024
    Are you interested in performing #colocalization analyses for eQTL and GWAS data? In this presentation @kjbenjamin90 walks us through #coloc (an #rstats 📦), #fastENLOC, #SuSiE and more 🗒️ docs.google.com/document/d/1y5… 🫕 colab.research.google.com/drive/1OonYKVG… youtu.be/tty5cdznLTE
    Image
    docs.google.com
    rstats-colocalization
    Colocalization Analysis in Genomics Coloc General Comprehensive vignettes available: https://chr1swallace.github.io/coloc/index.html Active development and community support: https://github.com/chr...
    1
  • @LIBDrstats
    LIBD rstats club
    @LIBDrstats
    Aug 30, 2024
    Interested in learning about #nano for editing files on the terminal? Or #rapids for GPU-powered analyses? Check @kjbenjamin90's recent presentation: 🗒️ docs.google.com/document/d/1Yc… youtu.be/pR3LaPKbg7k
    Image
    docs.google.com
    GNU nano and RAPIDS.ai
    GNU nano and RAPIDS.ai GNU nano Official website: https://www.nano-editor.org/ Cheatsheet: https://www.nano-editor.org/dist/latest/cheatsheet.html Online manual: https://www.nano-editor.org/dist/la...
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