./biology/py-cutadapt, Find and remove adapter sequences, primers, poly-A tails, etc

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Branch: CURRENT, Version: 4.7nb1, Package name: py313-cutadapt-4.7nb1, Maintainer: pkgsrc-users

Cutadapt finds and removes adapter sequences, primers, poly-A tails
and other types of unwanted sequence from your high-throughput
sequencing reads.

Master sites:

Filesize: 245.013 KB

Version history: (Expand)

CVS history: (Expand)


   2025-10-09 09:58:14 by Thomas Klausner | Files touched by this commit (442) 
Log message:
*: remove reference to (removed) Python 3.9
   2025-07-04 11:08:39 by Thomas Klausner | Files touched by this commit (49) 
Log message:
*: mark more py-cython dependencies as needing Python>=3.11
   2025-04-15 15:03:39 by Adam Ciarcinski | Files touched by this commit (10) | Package updated
Log message:
Fix PLIST after py-setuptools update; bump depends and revision
   2024-11-11 08:29:31 by Thomas Klausner | Files touched by this commit (862) 
Log message:
py-*: remove unused tool dependency

py-setuptools includes the py-wheel functionality nowadays
   2024-04-11 01:47:55 by Jason Bacon | Files touched by this commit (1) 
Log message:
biology/py-cutadapt: Release to pkgsrc-users@

Cutadapt has been replaced by fastq-trim in my toolbox
   2024-03-20 23:29:39 by Jason Bacon | Files touched by this commit (1) 
Log message:
biology/py-cutadapt: Restore setuptools and setuptools_scm

Builds without them listed as deps if they happen to be installed,
but fails on a blank pkgsrc installation
   2024-03-16 14:46:42 by Jason Bacon | Files touched by this commit (3) | Package updated
Log message:
py-cutadapt: Update to 4.7 (minor update)

Send error message to stderr
Add support for single-ended uBAM
Drop Python 3.7

Changes: https://cutadapt.readthedocs.io/en/stable/changes.html
   2024-02-18 12:14:08 by Thomas Klausner | Files touched by this commit (1) 
Log message:
py-cutadapt: add missing tool

Remove egg.mk leftover.