Seurat is an R package developed by Rahul Satija’s lab at @nygenome. Read our blog post to discover the steps for using Seurat to analyze CODEX datasets and perform cellular neighborhood analysis. bit.ly/3jOm3tm
#spatialbiology #singlecell #spatialanalysis
Akoya Biosciences
4,666 posts
Our mission is to bring context to biology & human health through the power of spatial phenotyping. We are The Spatial Biology Company®. 🧬🥼 #akoyabio
- Amazing @Nature paper where @MDAndersonNews researchers use our #PhenoImager solution to study the #spatial cellular distribution of immune cell populations using 23 makers in 5 #multiplex #immunofluorescence panels. go.nature.com/40LrjAy Congrats to all! @cara_haymaker
- Check out this highly #multiplexed tissue image of a human #tonsil (FFPE) on #PhenoCyclerFusion. This data was acquired in less than 1 day and consisted of 2,591,479 cells, each of which displayed distinct combinatorial antibody labeling patterns. #tissuetuesday #spatialbiology
- New @ScienceMagazine paper uses #PhenoCycler to create a #spatialatlas of the gut and its rewiring during ulcerative colitis (UC) pathogenesis! The spatial atlas is publicly browsable & has 42 tissue regions from 29 patients w/ UC & 5 healthy individuals. bit.ly/3kCJTvh
- Using #PhenoCycler, researchers at @StanfordMed generated high-dimensional spatial maps of #colorectalcancer (CRC) tissue & identified distinct cell types & “cellular neighborhoods” to understand how interactions between cells/neighborhoods can influence CRC patient outcomes.
- 🎉 Congratulations to Dr. Ryan Park @MassGeneralNews on receiving the 100-plex #HallmarksofCancer #grantaward! Dr. Park will use our 100-plex panel to characterize immune landscapes associated w/ #pancreaticductaladenocarcinoma on #PhenoCyclerFusion. bit.ly/3KYN34W
- 🎉 We are thrilled to be recognized as one of the top five public companies in this year's Top 10 #SpatialBiology Companies list by @GENbio! Being on this list is a great honor & a testament to our dedication to spatial biology. bit.ly/3FTwne9 #cancerresearch #biotech
- We are pleased to announce that Dr. David Braun (@braunmdphd) from @YaleCancer @YaleMed has been selected as the recipient of the Spatial #Multiomics #GrantAward using CODEX! Learn more about this award program and CODEX: bit.ly/3soJY7D #spatialbiology #singlecell
- This whole slide of a #headandnecktumor w/ 100+ #antibodies, imaged on #PhenoCyclerFusion, reveals 14 distinct cell types & 4 unique tumor regions. The lymphoid follicles are forming and infiltrating the tumor. Explore our #spatialphenotyping dataset: bit.ly/40LobW6
- Developed by @Penn researchers, STvEA is a multi-omics method that maps the CITE-seq transcriptome to spatially resolved CODEX mIHC data while retaining single-cell spatial resolution. Read the paper on @ScienceAdvances: bit.ly/3wJ4WxS
- In case you missed last week's big announcement, #AkoyaBio & @UQMedicine researchers have optimized and applied an ultra-high plex, #singlecell spatial protein analysis in #headandneck squamous cell carcinomas. Tissues were analyzed with a panel of 101 antibodies that targeted
- Pleased to see this first set of tonsil images that our customer, @LGMartelotto @UniofAdelaide generated using #PhenoCycler. Thanks to our Field Application Scientist, Dr. Williams for the exceptional onsite training including how to pair PhenoCycler w/ a @zeiss_micro microscope!
- In this week's @Nature issue, a paper shows how researchers use an imaging technique called #CODEX (now rebranded as #PhenoCycler) and #singlecell technologies to map the human #intestine. Learn how the study results describe the complexity of this organ's cell composition,
- Amazing image produced using @QuPath software by @Theo_BrainC_lab. The image showcases a blood vessel surrounded by various immune cells, including T-cells, B-cells, macrophages, and collagen. This image was captured from a #wholeslide image of human #glioblastoma, generated

















